4R4G

Crystal structure of a putative lipoprotein (ycdA) from Bacillus subtilis subsp. subtilis str. 168 at 2.62 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	YcdA C-terminal domain-like	8046473	4005104	SCOP2 (2022-06-29)
A	SCOP2 Family	YjhA-like	8046735	4005270	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	NTF2-like	8052407	3000472	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	MPT63/MPB63-like	8052408	3002065	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF4352	e4r4gA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Antigen MPT63/MPB63 (immunoprotective extracellular protein) (From Topology)	T: Antigen MPT63/MPB63 (immunoprotective extracellular protein)	F: DUF4352	ECOD (1.6)
A	DUF5105	e4r4gA2	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: DUF5105	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF17118	Domain of unknown function (DUF5105) (DUF5105)	Domain of unknown function (DUF5105)	-	Family
A	PF11611	Domain of unknown function (DUF4352) (DUF4352)	Domain of unknown function (DUF4352)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	putative lipoprotein YcdA	-	-	cell periphery plasma membrane membrane cellular anatomical entity membrane microdomain membrane raft

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR031343	Domain of unknown function DUF5105	Domain
A	IPR029051	Domain of unknown function DUF4352	Domain
A	IPR029050	Immunoprotective extracellular, immunoglobulin-like domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.