4R11 | pdb_00004r11

A conserved phosphorylation switch controls the interaction between cadherin and beta-catenin in vitro and in vivo

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d4r11e_	All alpha proteins	alpha-alpha superhelix	ARM repeat	automated matches	automated matches	roundworm (Caenorhabditis elegans ) [TaxId: 6239 ],	SCOPe (2.08)
C	d4r11c_	All alpha proteins	alpha-alpha superhelix	ARM repeat	automated matches	automated matches	roundworm (Caenorhabditis elegans ) [TaxId: 6239 ],	SCOPe (2.08)
A	d4r11a_	All alpha proteins	alpha-alpha superhelix	ARM repeat	automated matches	automated matches	roundworm (Caenorhabditis elegans ) [TaxId: 6239 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	ARM repeat-like	8080317	3000116	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ARM repeat-like	8080317	3000116	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ARM repeat-like	8080317	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Arm	e4r11E1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Arm	ECOD (v294.1)
C	Arm	e4r11C1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Arm	ECOD (v294.1)
A	Arm	e4r11A1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Arm	ECOD (v294.1)
F	Ribosom_S12_S23	e4r11F1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosom_S12_S23	ECOD (v294.1)
D	FlaF_Ig-like	e4r11D1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: FlaF_Ig-like	ECOD (v294.1)
B	Ribosom_S12_S23	e4r11B1	A: a/b three-layered sandwiches	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosom_S12_S23	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)
C	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)
A	1.25.10.10	Mainly Alpha	Alpha Horseshoe	Leucine-rich Repeat Variant	Leucine-rich Repeat Variant	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, C, E	PF00514	Armadillo/beta-catenin-like repeat (Arm)	Armadillo/beta-catenin-like repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E	Protein humpback-2	protein binding binding protein domain specific binding alpha-catenin binding molecular function inhibitor activity molecular function regulator activity transcription coactivator activity transcription regulator activity transcription coregulator activity protein phosphatase binding phosphatase binding enzyme binding kinase binding protein kinase binding protein binding binding protein domain specific binding alpha-catenin binding molecular function inhibitor activity molecular function regulator activity transcription coactivator activity transcription regulator activity transcription coregulator activity protein phosphatase binding phosphatase binding enzyme binding kinase binding protein kinase binding cell adhesion molecule binding cadherin binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding DNA-binding transcription factor binding	developmental process multicellular organismal process embryonic morphogenesis embryo development gastrulation multicellular organism development anatomical structure morphogenesis ameboidal-type cell migration anatomical structure development cell migration cellular process cell motility cell migration involved in gastrulation cellular response to stimulus developmental process multicellular organismal process embryonic morphogenesis embryo development gastrulation multicellular organism development anatomical structure morphogenesis ameboidal-type cell migration anatomical structure development cell migration cellular process cell motility cell migration involved in gastrulation cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway biological regulation cell communication signal transduction Wnt signaling pathway cell adhesion cell-cell adhesion cell-cell adhesion mediated by cadherin left/right axis specification pattern specification process left/right pattern formation axis specification regionalization establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle cellular component organization localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle cellular component organization or biogenesis microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation microtubule-based process cytoskeleton organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization actin filament-based process regulation of localization regulation of protein localization macromolecule localization intracellular protein localization embryonic body morphogenesis body morphogenesis embryo development ending in birth or egg hatching negative regulation of cell division negative regulation of cellular process negative regulation of biological process cell division regulation of cell division positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process	cell periphery protein-containing complex extrinsic component of plasma membrane catenin complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex extrinsic component of membrane intracellular anatomical structure cytoplasm cell-cell junction adherens junction cell periphery protein-containing complex extrinsic component of plasma membrane catenin complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane membrane protein complex extrinsic component of membrane intracellular anatomical structure cytoplasm cell-cell junction adherens junction anchoring junction cell junction membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B, D, F	Cadherin-related hmr-1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding delta-catenin binding beta-catenin binding	developmental process multicellular organismal process embryonic morphogenesis embryo development gastrulation multicellular organism development anatomical structure morphogenesis ameboidal-type cell migration anatomical structure development cell migration cellular process cell motility cell migration involved in gastrulation epithelium development developmental process multicellular organismal process embryonic morphogenesis embryo development gastrulation multicellular organism development anatomical structure morphogenesis ameboidal-type cell migration anatomical structure development cell migration cellular process cell motility cell migration involved in gastrulation epithelium development cellular developmental process cell differentiation tissue development epithelial cell differentiation epithelial cell morphogenesis involved in gastrulation cell development cell morphogenesis epithelial cell morphogenesis actin filament-based process apical constriction actin filament-based movement epithelial cell development apical constriction involved in gastrulation actin-mediated cell contraction cell adhesion cell-cell adhesion cell-cell adhesion mediated by cadherin axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cellular component organization neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis system development plasma membrane bounded cell projection organization nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons neuron development establishment of organelle localization cellular localization microtubule cytoskeleton organization spindle localization establishment or maintenance of cell polarity mitotic cell cycle localization establishment of mitotic spindle localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle microtubule cytoskeleton organization involved in mitosis cell cycle process establishment of localization establishment of cell polarity organelle organization mitotic cell cycle process establishment of mitotic spindle orientation microtubule-based process cytoskeleton organization actin cytoskeleton organization cortical actin cytoskeleton organization cortical cytoskeleton organization homophilic cell-cell adhesion embryo development ending in birth or egg hatching	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane somatodendritic compartment cell projection distal dendrite dendrite cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane somatodendritic compartment cell projection distal dendrite dendrite dendritic tree neuron projection plasma membrane bounded cell projection cell-cell junction adherens junction anchoring junction cell junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E	IPR016024	Armadillo-type fold	Homologous Superfamily
A, C, E	IPR013284	Beta-catenin	Family
A, C, E	IPR000225	Armadillo	Repeat
A, C, E	IPR011989	Armadillo-like helical	Homologous Superfamily
B, D, F	IPR015919	Cadherin-like superfamily	Homologous Superfamily
B, D, F	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
B, D, F	IPR000742	EGF-like domain	Domain
B, D, F	IPR001791	Laminin G domain	Domain
B, D, F	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
B, D, F	IPR056370	DE-cadherin-like, Ig-like domain	Domain
B, D, F	IPR039808	Cadherin	Family
B, D, F	IPR056448	Cadherin-related hmr-1, EGF domain	Domain
B, D, F	IPR020894	Cadherin conserved site	Conserved Site
B, D, F	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
B, D, F	IPR054522	Cadherin-related hmr-1, C-terminal	Domain
B, D, F	IPR002126	Cadherin-like	Domain

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B, D, F	SEP	Parent Component: SER RESID: AA0037 PSI-MOD : O-phospho-L-serine MOD:00046
B, D, F	TPO	Parent Component: THR RESID: AA0037 , AA0038 PSI-MOD : O-phospho-L-serine MOD:00046 , O-phospho-L-threonine MOD:00047

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.