4R0G | pdb_00004r0g

Crystal structure of Lpg0393 from Legionella pneumophila


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DFlaF_Ig-likee4r0gD1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: FlaF_Ig-likeECOD (v294.1)
CFlaF_Ig-likee4r0gC1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: FlaF_Ig-likeECOD (v294.1)
BLpg0393_VPS9e4r0gB1 A: a/b three-layered sandwichesX: HTHH: VPS9 domainT: VPS9 domainF: Lpg0393_VPS9ECOD (v294.1)
BRibosomal_L6ee4r0gB2 A: a/b three-layered sandwichesX: HTHH: HTHT: Ribosomal protein S2/SIS domainF: Ribosomal_L6eECOD (v294.1)
AFlaF_Ig-likee4r0gA1 A: a/b three-layered sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: FlaF_Ig-likeECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF22035Lpg0393 VPS9-like domain (Lpg0393_VPS9)Lpg0393 VPS9-like domainLpg0393 consists of two domains both of which composed of alpha- helices. The N-terminal domain contains seven helices and makes roughly a 90-degree angle with the C-terminal domain that forms a helical bundle structure [1]. The N-terminal domain is ...Lpg0393 consists of two domains both of which composed of alpha- helices. The N-terminal domain contains seven helices and makes roughly a 90-degree angle with the C-terminal domain that forms a helical bundle structure [1]. The N-terminal domain is similar to Vps9 domain of Rabex-5. Lpg0393 exhibits a GEF activity toward Rab5, Rab21 and Rab22, and this activity is associated with a VPS9-like domain of the protein.
Domain
A, B, C, D
PF18534Helical bundle domain (HBD)Helical bundle domainLpg0393 is a Legionella pneumophila effector protein. Structure analysis reveals that it has two domains, the N-terminal domain is a Vps9-like domain, which is structurally most similar to the catalytic core of human Rabex-5 that activates the endoso ...Lpg0393 is a Legionella pneumophila effector protein. Structure analysis reveals that it has two domains, the N-terminal domain is a Vps9-like domain, which is structurally most similar to the catalytic core of human Rabex-5 that activates the endosomal Rab proteins Rab5, Rab21 and Rab22. The C-terminal domain is a helical bundle domain. The C-terminal helical bundle of Lpg0393 corresponds to the N-terminal helical bundle of Rabex-5, it lacks an obvious region that corresponds to the membrane-binding motif of Rabex-5. One possibility may be that Lpg0393 localization to endosomes depends on an unknown Legionella effector [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage