Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08151e4r0gA2 A: alpha bundlesX: Bromodomain-likeH: Lpg0393 helical domain (From Topology)T: Lpg0393 helical domainF: EUF08151ECOD (1.6)
AEUF08253e4r0gA1 A: alpha complex topologyX: VPS9 domain (From Topology)H: VPS9 domain (From Topology)T: VPS9 domainF: EUF08253ECOD (1.6)
BEUF08151e4r0gB2 A: alpha bundlesX: Bromodomain-likeH: Lpg0393 helical domain (From Topology)T: Lpg0393 helical domainF: EUF08151ECOD (1.6)
BEUF08253e4r0gB1 A: alpha complex topologyX: VPS9 domain (From Topology)H: VPS9 domain (From Topology)T: VPS9 domainF: EUF08253ECOD (1.6)
CEUF08151e4r0gC1 A: alpha bundlesX: Bromodomain-likeH: Lpg0393 helical domain (From Topology)T: Lpg0393 helical domainF: EUF08151ECOD (1.6)
CEUF08253e4r0gC2 A: alpha complex topologyX: VPS9 domain (From Topology)H: VPS9 domain (From Topology)T: VPS9 domainF: EUF08253ECOD (1.6)
DEUF08151e4r0gD1 A: alpha bundlesX: Bromodomain-likeH: Lpg0393 helical domain (From Topology)T: Lpg0393 helical domainF: EUF08151ECOD (1.6)
DEUF08253e4r0gD2 A: alpha complex topologyX: VPS9 domain (From Topology)H: VPS9 domain (From Topology)T: VPS9 domainF: EUF08253ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF22035Lpg0393 VPS9-like domain (Lpg0393_VPS9)Lpg0393 VPS9-like domainLpg0393 consists of two domains both of which composed of alpha- helices. The N-terminal domain contains seven helices and makes roughly a 90-degree angle with the C-terminal domain that forms a helical bundle structure [1]. The N-terminal domain is ...Lpg0393 consists of two domains both of which composed of alpha- helices. The N-terminal domain contains seven helices and makes roughly a 90-degree angle with the C-terminal domain that forms a helical bundle structure [1]. The N-terminal domain is similar to Vps9 domain of Rabex-5. Lpg0393 exhibits a GEF activity toward Rab5, Rab21 and Rab22, and this activity is associated with a VPS9-like domain of the protein.
Domain
A, B, C, D
PF18534Helical bundle domain (HBD)Helical bundle domainLpg0393 is a Legionella pneumophila effector protein. Structure analysis reveals that it has two domains, the N-terminal domain is a Vps9-like domain, which is structurally most similar to the catalytic core of human Rabex-5 that activates the endoso ...Lpg0393 is a Legionella pneumophila effector protein. Structure analysis reveals that it has two domains, the N-terminal domain is a Vps9-like domain, which is structurally most similar to the catalytic core of human Rabex-5 that activates the endosomal Rab proteins Rab5, Rab21 and Rab22. The C-terminal domain is a helical bundle domain. The C-terminal helical bundle of Lpg0393 corresponds to the N-terminal helical bundle of Rabex-5, it lacks an obvious region that corresponds to the membrane-binding motif of Rabex-5. One possibility may be that Lpg0393 localization to endosomes depends on an unknown Legionella effector [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR041321Lpg0393, helical bundle domainDomain