4QYK | pdb_00004qyk

Crystal structure of a canine parvovirus variant

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z	MVD-like_N	e4qykZ1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
Y	MVD-like_N	e4qykY1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
X	MVD-like_N	e4qykX1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
W	MVD-like_N	e4qykW1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
V	MVD-like_N	e4qykV1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
U	MVD-like_N	e4qykU1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
T	MVD-like_N	e4qykT1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
S	MVD-like_N	e4qykS1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
R	MVD-like_N	e4qykR1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
Q [auth P]	MVD-like_N	e4qykP1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
P [auth O]	MVD-like_N	e4qykO1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
O [auth M]	MVD-like_N	e4qykM1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
N [auth L]	MVD-like_N	e4qykL1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
M [auth K]	MVD-like_N	e4qykK1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
L [auth I]	MVD-like_N	e4qykI1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
K [auth H]	MVD-like_N	e4qykH1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
J [auth G]	MVD-like_N	e4qykG1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
I [auth F]	MVD-like_N	e4qykF1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
H [auth D]	MVD-like_N	e4qykD1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
G [auth C]	MVD-like_N	e4qykC1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
F [auth B]	MVD-like_N	e4qykB1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
E [auth Q]	MVD-like_N	e4qykQ1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
DA [auth d]	MVD-like_N	e4qykd1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
D [auth N]	MVD-like_N	e4qykN1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
CA [auth c]	MVD-like_N	e4qykc1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
C [auth J]	MVD-like_N	e4qykJ1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
BA [auth b]	MVD-like_N	e4qykb1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
B [auth E]	MVD-like_N	e4qykE1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
AA [auth a]	MVD-like_N	e4qyka1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)
A	MVD-like_N	e4qykA1	A: beta barrels	X: Type III secretion system domain-like	H: Antibiotic binding domain of TipA-like multidrug resistance regulators	T: Antibiotic binding domain of TipA-like multidrug resistance regulators	F: MVD-like_N	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], B [auth E], BA [auth b], C [auth J], A, AA [auth a], B [auth E], BA [auth b], C [auth J], CA [auth c], D [auth N], DA [auth d], E [auth Q], F [auth B], G [auth C], H [auth D], I [auth F], J [auth G], K [auth H], L [auth I], M [auth K], N [auth L], O [auth M], P [auth O], Q [auth P], R, S, T, U, V, W, X, Y, Z	Capsid protein VP1	structural molecule activity cation binding ion binding binding metal ion binding small molecule binding	import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host import into cell receptor-mediated endocytosis of virus by host cell biological process involved in interspecies interaction between organisms transport viral life cycle establishment of localization vesicle-mediated transport biological process involved in interaction with host biological process involved in symbiotic interaction localization symbiont entry into host cell clathrin-dependent endocytosis viral process symbiont entry into host cellular process clathrin-dependent endocytosis of virus by host cell receptor-mediated endocytosis endocytosis endocytosis involved in viral entry into host cell virion attachment to host cell adhesion of symbiont to host cell adhesion of symbiont to host symbiont-mediated disruption of host anatomical structure symbiont entry into host cell via permeabilization of host membrane symbiont-mediated disruption of host cellular anatomical structure symbiont-mediated perturbation of host membrane disruption of anatomical structure in another organism	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], B [auth E], BA [auth b], C [auth J], A, AA [auth a], B [auth E], BA [auth b], C [auth J], CA [auth c], D [auth N], DA [auth d], E [auth Q], F [auth B], G [auth C], H [auth D], I [auth F], J [auth G], K [auth H], L [auth I], M [auth K], N [auth L], O [auth M], P [auth O], Q [auth P], R, S, T, U, V, W, X, Y, Z	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], B [auth E], BA [auth b], C [auth J], A, AA [auth a], B [auth E], BA [auth b], C [auth J], CA [auth c], D [auth N], DA [auth d], E [auth Q], F [auth B], G [auth C], H [auth D], I [auth F], J [auth G], K [auth H], L [auth I], M [auth K], N [auth L], O [auth M], P [auth O], Q [auth P], R, S, T, U, V, W, X, Y, Z	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], B [auth E], BA [auth b], C [auth J], A, AA [auth a], B [auth E], BA [auth b], C [auth J], CA [auth c], D [auth N], DA [auth d], E [auth Q], F [auth B], G [auth C], H [auth D], I [auth F], J [auth G], K [auth H], L [auth I], M [auth K], N [auth L], O [auth M], P [auth O], Q [auth P], R, S, T, U, V, W, X, Y, Z	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], B [auth E], BA [auth b], C [auth J], A, AA [auth a], B [auth E], BA [auth b], C [auth J], CA [auth c], D [auth N], DA [auth d], E [auth Q], F [auth B], G [auth C], H [auth D], I [auth F], J [auth G], K [auth H], L [auth I], M [auth K], N [auth L], O [auth M], P [auth O], Q [auth P], R, S, T, U, V, W, X, Y, Z	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.