Annotations: 4QRY

the ground state and the N intermediate of pharaonis halorhodopsin in complex with bromide ion

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F [auth G]	d4qryg_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)
E [auth F]	d4qryf_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)
D [auth E]	d4qrye_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)
C	d4qryc_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)
B	d4qryb_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)
A	d4qrya_	Membrane and cell surface proteins and peptides	Class A G protein-coupled receptor (GPCR)-like	Class A G protein-coupled receptor (GPCR)-like	automated matches	automated matches	(Natronomonas pharaonis ) [TaxId: 2257 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F [auth G]	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)
D [auth E]	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	G protein-coupled receptor-like	8071318	3000473	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F [auth G]	ANAPC8	e4qryG1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)
E [auth F]	ANAPC8	e4qryF1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)
D [auth E]	ANAPC8	e4qryE1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)
C	ANAPC8	e4qryC1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)
B	ANAPC8	e4qryB1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)
A	ANAPC8	e4qryA1	A: alpha arrays	X: Repetitive alpha hairpins	H: Porins	T: Porin	F: ANAPC8	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth G]	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
E [auth F]	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
D [auth E]	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
C	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
B	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)
A	1.20.1070.10	Mainly Alpha	Up-down Bundle	Rhopdopsin 7-helix transmembrane proteins	Rhodopsin 7-helix transmembrane proteins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	Halorhodopsin	passive transmembrane transporter activity monoatomic ion channel activity channel activity monoatomic ion transmembrane transporter activity transporter activity transmembrane transporter activity	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR018229	Rhodopsin, retinal binding site	Binding Site
A, B, C, D [auth E], E [auth F], A, B, C, D [auth E], E [auth F], F [auth G]	IPR001425	Archaeal/bacterial/fungal rhodopsins	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D [auth E], E [auth F] A, B, C, D [auth E], E [auth F], F [auth G]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D [auth E], E [auth F] A, B, C, D [auth E], E [auth F], F [auth G]	MemProtMD	Annotated as membrane protein by MemProtMD