4QQB
Structural basis for the assembly of the SXL-UNR translation regulatory complex
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035334 | 3000110 | SCOP2B (2022-06-29) |
D [auth B] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035333 | 3000110 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035333 | 3000110 | SCOP2B (2022-06-29) |
B [auth A] | SCOP2B Superfamily | RNA-binding domain, RBD | 8035334 | 3000110 | SCOP2B (2022-06-29) |
E [auth X] | SCOP2 Family | Cold shock DNA-binding domain-like | 8067238 | 4001909 | SCOP2 (2022-06-29) |
E [auth X] | SCOP2 Superfamily | Nucleic acid-binding proteins | 8067239 | 3000135 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | RRM_1_1 | e4qqbB1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
D [auth B] | RRM_1_4 | e4qqbB2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
B [auth A] | RRM_1_1 | e4qqbA1 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_1 | ECOD (1.6) |
B [auth A] | RRM_1_4 | e4qqbA2 | A: a+b two layers | X: Alpha-beta plaits | H: RNA-binding domain, RBD (From Topology) | T: RNA-binding domain, RBD | F: RRM_1_4 | ECOD (1.6) |
E [auth X] | CSD | e4qqbX1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
F [auth Y] | CSD | e4qqbY1 | A: beta barrels | X: OB-fold | H: Nucleic acid-binding proteins (From Topology) | T: Nucleic acid-binding proteins | F: CSD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth B] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
B [auth A] | 3.30.70.330 | Alpha Beta | 2-Layer Sandwich | Alpha-Beta Plaits | RRM (RNA recognition motif) domain | CATH (4.3.0) |
E [auth X] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
F [auth Y] | 2.40.50.140 | Mainly Beta | Beta Barrel | OB fold (Dihydrolipoamide Acetyltransferase, E2P) | Nucleic acid-binding proteins | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
B [auth A], D [auth B] | PF00076 | RNA recognition motif (RRM_1) | RNA recognition motif | The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ... | Domain |
E [auth X], F [auth Y] | PF00313 | 'Cold-shock' DNA-binding domain (CSD) | 'Cold-shock' DNA-binding domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
B [auth A], D [auth B] | IPR006546 | Sex-lethal splicing factor | Family |
B [auth A], D [auth B] | IPR000504 | RNA recognition motif domain | Domain |
B [auth A], D [auth B] | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily | Homologous Superfamily |
B [auth A], D [auth B] | IPR002343 | Paraneoplastic encephalomyelitis antigen | Family |
B [auth A], D [auth B] | IPR035979 | RNA-binding domain superfamily | Homologous Superfamily |
E [auth X], F [auth Y] | IPR011129 | Cold-shock domain | Domain |
E [auth X], F [auth Y] | IPR012340 | Nucleic acid-binding, OB-fold | Homologous Superfamily |
E [auth X], F [auth Y] | IPR002059 | Cold-shock protein Csp, DNA-binding | Domain |
E [auth X], F [auth Y] | IPR019844 | Cold-shock domain, conserved site | Conserved Site |