Mechanistic basis of plasmid-specific DNA binding of the F plasmid regulatory protein, TraM
External Resource: Annotation
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
A | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | IHF-like DNA-binding proteins | 8073273 | 3000426 | SCOP2B (2022-06-29) |
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
A | PF05261 | e4qpqA1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
B | PF05261 | e4qpqB1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
C | PF05261 | e4qpqC1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
D | PF05261 | e4qpqD1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
E | PF05261 | e4qpqE1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
F | PF05261 | e4qpqF1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
G | PF05261 | e4qpqG1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
H | PF05261 | e4qpqH1 | A: alpha arrays | X: HTH | H: DNA-binding domain of TraM protein (From Topology) | T: DNA-binding domain of TraM protein | F: PF05261 | ECOD (1.6) |
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|
A | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
B | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
C | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
D | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
E | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
F | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
G | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
H | 1.10.10.450 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | TraM protein, DNA-binding | CATH (4.3.0) |
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|
| Relaxosome protein TraM | | - | |
I [auth P] | sbmA DNA1 | - | - | - |
J [auth Q] | sbmA DNA2 | - | - | - |