4QJ4 | pdb_00004qj4

Structure of a fragment of human phospholipase C-beta3 delta472-569, bound to IP3 and in complex with Galphaq

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8056800	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Galpha insert domain-like	8056801	3000669	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8056800	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4qj4B1	A: jelly-roll	X: Double-stranded beta-helix	H: Double-stranded beta-helix	T: Ribosomal_L24e	F:	ECOD (20:10:01)
A		e4qj4A1	A: Insertion subdomain in DsbA-like	X: Insertion subdomain in DsbA-like	H: Insertion subdomain in DsbA-like	T: Rhv	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.30.29.240	Mainly Beta	Roll	PH-domain like		CATH (4.3.0)
B	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)
B	3.20.20.190	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Phosphatidylinositol (PI) phosphodiesterase	CATH (4.3.0)
B	2.60.40.150	Mainly Beta	Sandwich	Immunoglobulin-like	C2 domain	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	1.10.400.10	Mainly Alpha	Orthogonal Bundle	GI Alpha 1, domain 2-like	GI Alpha 1, domain 2-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF22631	Phosphoinositide phospholipase C beta1-4-like EF-hand domain (PLCB1-4-like_EFh)	Phosphoinositide phospholipase C beta1-4-like EF-hand domain	This entry represents the first EF-hand domain found in 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-4 (PLCB1-4) from human and related proteins. PLC-beta isoforms mediate the production of the second messenger molecules diacylgly ...	This entry represents the first EF-hand domain found in 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-1-4 (PLCB1-4) from human and related proteins. PLC-beta isoforms mediate the production of the second messenger molecules diacylglycerol (DAG) and inositol 1,4,5-trisphosphate (IP3) to propagate signals for several physiological responses [1-5].	Domain
B	PF17787	PH domain (PH_14)	PH domain	This entry corresponds to the PH domain found at the N-terminus of phospholipase C enzymes [1].	Domain
B	PF00387	Phosphatidylinositol-specific phospholipase C, Y domain (PI-PLC-Y)	Phosphatidylinositol-specific phospholipase C, Y domain	-	Family
B	PF00388	Phosphatidylinositol-specific phospholipase C, X domain (PI-PLC-X)	Phosphatidylinositol-specific phospholipase C, X domain	-	Family
B	PF00168	C2 domain (C2)	C2 domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3	phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphatidylinositol phospholipase C activity phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity C-type glycerophospholipase activity catalytic activity lipase activity cation binding ion binding binding calcium ion binding phosphoric ester hydrolase activity phospholipase activity hydrolase activity, acting on ester bonds phosphatidylinositol phospholipase C activity phosphoric diester hydrolase activity glycerophospholipase activity hydrolase activity C-type glycerophospholipase activity catalytic activity lipase activity cation binding ion binding binding calcium ion binding metal ion binding small molecule binding phosphatidylinositol-4,5-bisphosphate phospholipase C activity cell adhesion molecule binding cadherin binding protein binding calmodulin binding molecular function activator activity molecular function regulator activity molecular adaptor activity	cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation phospholipase C-activating serotonin receptor signaling pathway G protein-coupled serotonin receptor signaling pathway cell communication phospholipase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction intracellular signal transduction cellular response to stimulus regulation of biological process regulation of cellular process response to stimulus signaling biological regulation phospholipase C-activating serotonin receptor signaling pathway G protein-coupled serotonin receptor signaling pathway cell communication phospholipase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular process signal transduction intracellular signal transduction phosphatidylinositol-mediated signaling lipid catabolic process catabolic process metabolic process primary metabolic process lipid metabolic process calcium ion transmembrane import into cytosol transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport release of sequestered calcium ion into cytosol localization monoatomic ion transport monoatomic cation transport calcium ion transmembrane transport multicellular organismal process system process regulation of systemic arterial blood pressure circulatory system process regulation of blood pressure regulation of biological quality blood circulation phosphatidylinositol metabolic process glycerophospholipid metabolic process phospholipid metabolic process organophosphate metabolic process phosphate-containing compound metabolic process glycerolipid metabolic process phosphorus metabolic process	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle postsynapse synapse cell junction cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle postsynapse synapse cell junction postsynaptic cytosol
A	Guanine nucleotide-binding protein G(q) subunit alpha	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-containing complex binding binding G-protein beta/gamma-subunit complex binding phosphoric ester hydrolase activity alkylglycerophosphoethanolamine phosphodiesterase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-containing complex binding binding G-protein beta/gamma-subunit complex binding phosphoric ester hydrolase activity alkylglycerophosphoethanolamine phosphodiesterase activity hydrolase activity, acting on ester bonds phosphoric diester hydrolase activity hydrolase activity catalytic activity cation binding ion binding metal ion binding small molecule binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding G protein activity protein binding signaling receptor binding G protein-coupled receptor binding	cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process cell surface receptor signaling pathway response to stimulus regulation of Wnt signaling pathway signaling regulation of canonical Wnt signaling pathway canonical Wnt signaling pathway biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication cellular process signal transduction Wnt signaling pathway developmental process heart development multicellular organism development multicellular organismal process anatomical structure development animal organ development circulatory system development system development system process circulatory system process regulation of blood pressure regulation of biological quality blood circulation regulation of protein stability protein stabilization phospholipase C-activating serotonin receptor signaling pathway G protein-coupled serotonin receptor signaling pathway phospholipase C-activating G protein-coupled receptor signaling pathway G protein-coupled receptor signaling pathway cellular developmental process cell development developmental maturation nervous system development generation of neurons neurogenesis neuron differentiation neuron remodeling anatomical structure maturation cell differentiation neuron development neuron maturation cell maturation skeletal system development glutamate receptor signaling pathway pigmentation developmental pigmentation adenylate cyclase-activating G protein-coupled receptor signaling pathway adenylate cyclase-modulating G protein-coupled receptor signaling pathway adenylate cyclase-activating G protein-coupled cAMP receptor signaling pathway regulation of body fluid levels wound healing cell activation hemostasis regulation of cell activation blood coagulation regulation of platelet activation response to stress coagulation regulation of multicellular organismal process response to wounding platelet activation forebrain development central nervous system neuron development central nervous system neuron differentiation head development forebrain generation of neurons brain development forebrain neuron development central nervous system development forebrain neuron differentiation phospholipase C-activating dopamine receptor signaling pathway cellular response to nitrogen compound response to dopamine cellular response to dopamine response to monoamine response to catecholamine cellular response to catecholamine stimulus G protein-coupled dopamine receptor signaling pathway response to oxygen-containing compound response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to monoamine stimulus response to chemical neuropeptide signaling pathway negative regulation of potassium ion transport regulation of localization regulation of potassium ion transport transport regulation of transport negative regulation of monoatomic ion transport regulation of monoatomic ion transport negative regulation of biological process negative regulation of transport establishment of localization metal ion transport localization monoatomic ion transport potassium ion transport monoatomic cation transport regulation of metal ion transport synaptic signaling phospholipase C-activating G protein-coupled acetylcholine receptor signaling pathway cellular response to acetylcholine cell-cell signaling acetylcholine receptor signaling pathway postsynaptic signal transduction G protein-coupled acetylcholine receptor signaling pathway response to acetylcholine cranial skeletal system development negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death negative regulation of apoptotic process negative regulation of cellular process apoptotic process programmed cell death action potential regulation of membrane potential response to endogenous stimulus hormone-mediated signaling pathway cellular response to endogenous stimulus response to hormone cellular response to hormone stimulus maternal behavior behavior parental behavior reproductive process multicellular organismal reproductive process reproductive behavior response to pH cellular response to pH response to abiotic stimulus cellular response to acidic pH response to acidic pH cellular response to abiotic stimulus cellular response to environmental stimulus pigment cell differentiation regulation of developmental process regulation of pigment cell differentiation regulation of cell differentiation melanocyte differentiation regulation of melanocyte differentiation endothelin receptor signaling pathway response to ketone response to prostaglandin response to lipid response to alcohol response to prostaglandin E phospholipase C-activating G protein-coupled glutamate receptor signaling pathway G protein-coupled glutamate receptor signaling pathway positive regulation of cell communication establishment of protein localization nitrogen compound transport positive regulation of establishment of protein localization positive regulation of insulin secretion intracellular protein localization regulation of peptide hormone secretion regulation of hormone levels positive regulation of peptide hormone secretion establishment of protein localization to extracellular region protein secretion regulation of protein secretion regulation of secretion positive regulation of protein localization regulation of hormone secretion regulation of protein localization regulation of peptide secretion positive regulation of biological process positive regulation of secretion by cell hormone secretion protein localization to extracellular region positive regulation of protein transport peptide secretion regulation of secretion by cell secretion by cell positive regulation of hormone secretion positive regulation of secretion signal release positive regulation of cellular process positive regulation of peptide secretion secretion regulation of peptide transport regulation of establishment of protein localization export from cell regulation of protein transport positive regulation of protein secretion peptide transport positive regulation of transport protein transport regulation of insulin secretion peptide hormone secretion macromolecule localization hormone transport insulin secretion positive regulation of signaling post-embryonic development ligand-gated ion channel signaling pathway limb development appendage development embryonic limb morphogenesis embryonic morphogenesis embryonic appendage morphogenesis embryo development anatomical structure morphogenesis appendage morphogenesis embryonic digit morphogenesis limb morphogenesis	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane somatodendritic compartment cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure nuclear membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection cytoplasm Golgi apparatus cell body protein-containing complex extrinsic component of plasma membrane catalytic complex plasma membrane protein complex cytoplasmic side of membrane plasma membrane membrane protein complex heterotrimeric G-protein complex side of membrane cell periphery cytoplasmic side of plasma membrane GTPase complex extrinsic component of membrane extrinsic component of cytoplasmic side of plasma membrane membrane microdomain membrane raft plasma membrane raft plasma membrane region caveola presynapse synapse cell junction postsynapse postsynaptic cytosol cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR016280	Phosphatidylinositol-4, 5-bisphosphate phosphodiesterase beta	Family
B	IPR001711	Phospholipase C, phosphatidylinositol-specific, Y domain	Domain
B	IPR000008	C2 domain	Domain
B	IPR000909	Phosphatidylinositol-specific phospholipase C, X domain	Domain
B	IPR011992	EF-hand domain pair	Homologous Superfamily
B	IPR053945	Phosphoinositide phospholipase C beta 1-4-like, EF-hand domain	Domain
B	IPR001192	Phosphoinositide phospholipase C family	Family
B	IPR042531	Phospholipase C-beta, C-terminal domain superfamily	Homologous Superfamily
B	IPR017946	PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily	Homologous Superfamily
B	IPR014815	Phospholipase C-beta, C-terminal domain	Domain
B	IPR035892	C2 domain superfamily	Homologous Superfamily
B	IPR037862	PLC-beta, PH domain	Domain
A	IPR001019	Guanine nucleotide binding protein, alpha subunit	Family
A	IPR000654	G-protein alpha subunit, group Q	Family
A	IPR011025	G protein alpha subunit, helical insertion	Homologous Superfamily
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: Q01970	alopecia areata hypertensive disorder primary biliary cholangitis skin basal cell carcinoma attention deficit hyperactivity disorder, inattentive type leprosy psoriasis vitiligo Crohn disease pancreatic ductal adenocarcinoma sclerosing cholangitis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.