4QIJ | pdb_00004qij

Crystal structure of MenB from Mycobacteria tuberculosis in complex with 1-HNA-CoA

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4qija_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Bd4qijb_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Fd4qijf_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Id4qiji_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Ld4qijl_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Kd4qijk_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Jd4qijj_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Hd4qijh_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Gd4qijg_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Ed4qije_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Dd4qijd_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)
Cd4qijc_ Alpha and beta proteins (a/b) ClpP/crotonase ClpP/crotonase Crotonase-like automated matches (Mycobacterium tuberculosis H37Rv ) [TaxId: 83332 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyClpP/crotonase 8058003 3000033 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AArfe4qijA1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
BArfe4qijB1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
FArfe4qijF1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
IArfe4qijI1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
LArfe4qijL1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
KArfe4qijK1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
JArfe4qijJ1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
HArfe4qijH1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
GArfe4qijG1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
EArfe4qijE1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
DArfe4qijD1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)
CArfe4qijC1 A: a/b three-layered sandwichesX: thumb domain in bacteriophage RB69-like DNA polymerase IH: thumb domain in bacteriophage RB69-like DNA polymerase IT: thumb domain in bacteriophage RB69-like DNA polymerase IF: ArfECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
A1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
B3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
B1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
F3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
F1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
I3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
I1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
L3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
L1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
K3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
K1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
J3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
J1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
H3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
H1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
G3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
G1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
E3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
E1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
D3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
D1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)
C3.90.226.10 Alpha Beta Alpha-Beta Complex 2-enoyl-CoA Hydratase Chain A, domain 1CATH (4.3.0)
C1.10.12.10 Mainly Alpha Orthogonal Bundle Lyase 2-enoyl-coa Hydratase Chain A, domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF00378Enoyl-CoA hydratase/isomerase (ECH_1)Enoyl-CoA hydratase/isomeraseThis family contains a diverse set of enzymes including: enoyl-CoA hydratase, napthoate synthase, carnitate racemase, 3-hydroxybutyryl-CoA dehydratase and dodecanoyl-CoA delta-isomerase. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
1,4-Dihydroxy-2-naphthoyl-CoA synthase

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR029045ClpP/crotonase-like domain superfamilyHomologous Superfamily
A, B, C, D, E
IPR0101981,4-Dihydroxy-2-naphthoyl-CoA synthase, MenBFamily
A, B, C, D, E
IPR001753Enoyl-CoA hydratase/isomerase-like domainDomain
A, B, C, D, E
IPR014748Enoyl-CoA hydratase, C-terminalHomologous Superfamily