4QFU | pdb_00004qfu

Crystal structure of a glycoside hydrolase family 5 (BVU_2644) from Bacteroides vulgatus ATCC 8482 at 1.90 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
D	SCOP2 Family	BVU_2644 C-terminal domain-like	8048077	4005945	SCOP2 (2022-06-29)
D	SCOP2 Family	GH5 catalytic domain-like	8048376	4006076	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2 (2022-06-29)
C	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092271	3001528	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	(Trans)glycosidases	8092272	3000313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	YajR_YAM	e4qfuF1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
G	YajR_YAM	e4qfuG1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
I	YajR_YAM	e4qfuI1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
J	YajR_YAM	e4qfuJ1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
K	YajR_YAM	e4qfuK1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
L	YajR_YAM	e4qfuL1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
H	YajR_YAM	e4qfuH1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
E	YajR_YAM	e4qfuE1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
D	YajR_YAM	e4qfuD1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
C	YajR_YAM	e4qfuC1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
B	YajR_YAM	e4qfuB1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)
A	YajR_YAM	e4qfuA1	A: beta barrels	X: OB-fold	H: SH3	T: SH3	F: YajR_YAM	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
G	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
I	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
J	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
K	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
L	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
H	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
E	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
D	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
C	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR024749	Putative collagen-binding domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR025277	Apiosidase-like, catalytic domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.