4Q2J
A novel structure-based mechanism for DNA-binding of SATB1
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | SATB1 N-terminal domain-like | 8045731 | 4004645 | SCOP2 (2022-06-29) |
A | SCOP2 Family | SATB1 DNA-binding domain-like | 8045771 | 4004674 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ubiquitin-like | 8053931 | 3000157 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | lambda C1 repressor DNA-binding domain-like | 8053933 | 3000119 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Ubiquitin-like | 8053931 | 3000157 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ubiquitin-like | 8053931 | 3000157 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | lambda C1 repressor DNA-binding domain-like | 8053933 | 3000119 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ubiquitin-like | 8053931 | 3000157 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | CUTL | e4q2jA2 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CUTL | ECOD (1.6) |
A | ULD | e4q2jA1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ULD | ECOD (1.6) |
B | ULD | e4q2jB1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ULD | ECOD (1.6) |
C | ULD | e4q2jC1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ULD | ECOD (1.6) |
D | CUTL | e4q2jD2 | A: alpha arrays | X: HTH | H: HTH | T: tetra-helical, lambda repressor-like | F: CUTL | ECOD (1.6) |
D | ULD | e4q2jD1 | A: a+b two layers | X: beta-Grasp | H: Ubiquitin-related | T: Ubiquitin-like | F: ULD | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.10.20.710 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | SATB, ubiquitin-like oligomerisation domain | CATH (4.3.0) |
A | 1.10.260.70 | Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | SATB, CULT domain | CATH (4.3.0) |
B | 3.10.20.710 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | SATB, ubiquitin-like oligomerisation domain | CATH (4.3.0) |
C | 3.10.20.710 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | SATB, ubiquitin-like oligomerisation domain | CATH (4.3.0) |
D | 3.10.20.710 | Alpha Beta | Roll | Ubiquitin-like (UB roll) | SATB, ubiquitin-like oligomerisation domain | CATH (4.3.0) |
D | 1.10.260.70 | Mainly Alpha | Orthogonal Bundle | 434 Repressor (Amino-terminal Domain) | SATB, CULT domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF16534 | Ubiquitin-like oligomerisation domain of SATB (ULD) | Ubiquitin-like oligomerisation domain of SATB | ULD is an N-terminal oligomerisation domain of SATB or special AT-rich sequence-binding proteins. SATBs are global chromatin organisers and regulators of gene expression that are essential for T-cell development, breast cancer tumour growth and meta ... | Domain | |
PF16557 | CUT1-like DNA-binding domain of SATB (CUTL) | CUT1-like DNA-binding domain of SATB | CUTL is part of the N-terminal region of SATB proteins, special AT-rich sequence-binding proteins that are global chromatin organisers and gene expression regulators essential for T-cell development and breast cancer tumour growth and metastasis. CUT ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR038216 | SATB, CUTL domain superfamily | Homologous Superfamily | |
IPR039673 | DNA-binding protein SATB1/SATB2 | Family | |
IPR032355 | SATB, CUT1-like DNA-binding domain | Domain | |
IPR003350 | CUT domain | Domain | |
IPR009057 | Homedomain-like superfamily | Homologous Superfamily | |
IPR032392 | SATB, ubiquitin-like oligomerisation domain | Domain | |
IPR038224 | SATB, ULD domain superfamily | Homologous Superfamily | |
IPR010982 | Lambda repressor-like, DNA-binding domain superfamily | Homologous Superfamily | |
IPR001356 | Homeodomain | Domain |