4Q2B | pdb_00004q2b

The crystal structure of an endo-1,4-D-glucanase from Pseudomonas putida KT2440

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2B (2022-06-29)
B	SCOP2 Family	Cellulases catalytic domain	8101700	4001168	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Six-hairpin glycosidases	8101701	3000970	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Terpene_syn_C_2	e4q2bF1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)
E	Terpene_syn_C_2	e4q2bE1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)
D	Terpene_syn_C_2	e4q2bD1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)
C	Terpene_syn_C_2	e4q2bC1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)
B	Terpene_syn_C_2	e4q2bB1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)
A	Terpene_syn_C_2	e4q2bA1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
E	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
D	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
C	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
B	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)
A	1.50.10.10	Mainly Alpha	Alpha/alpha barrel	Glycosyltransferase		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01270	Glycosyl hydrolases family 8 (Glyco_hydro_8)	Glycosyl hydrolases family 8	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Endo-1,4-beta-D-glucanase	hydrolase activity, acting on glycosyl bonds cellulase activity hydrolase activity, hydrolyzing O-glycosyl compounds hydrolase activity catalytic activity	carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process carbohydrate metabolic process catabolic process glucan catabolic process beta-glucan metabolic process carbohydrate catabolic process primary metabolic process macromolecule catabolic process polysaccharide metabolic process glucan metabolic process beta-glucan catabolic process polysaccharide catabolic process metabolic process cellular process cellulose catabolic process macromolecule metabolic process cellulose metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR012341	Six-hairpin glycosidase-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR002037	Glycoside hydrolase, family 8	Family
A, B, C, D, E A, B, C, D, E, F	IPR008928	Six-hairpin glycosidase superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR019834	Glycoside hydrolase, family 8, conserved site	Conserved Site

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.