4Q0Z | pdb_00004q0z

The catalytic core of Rad2 in complex with DNA substrate (complex III)

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Pribosyltran	e4q0zF1	A: a/b three-layered sandwiches	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: Pribosyltran	ECOD (v294.1)
E	Pribosyltran	e4q0zE1	A: a/b three-layered sandwiches	X: Middle and GTPase effector domains in dynamin-related proteins	H: Middle and GTPase effector domains in dynamin-related proteins	T: Middle and GTPase effector domains in dynamin-related proteins	F: Pribosyltran	ECOD (v294.1)
B	DNA_pol_B	e4q0zB1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: DNA_pol_B	ECOD (v294.1)
A	NAGLU_N	e4q0zA1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: NAGLU_N	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F	PF00867	XPG I-region (XPG_I)	XPG I-region	-	Family
A, B, E, F	PF00752	XPG N-terminal domain (XPG_N)	XPG N-terminal domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, H	DNA (5'-D(TPCPTPGPAPGPAPCPAPAPGPGPGPAPGPCP*T)-3')	-	-	-
C, G	DNA (5'-D(TPGPCPTPCPCPCPTPTPGPTPCPTPCPAPGP*T)-3')	-	-	-
A, B, E, F	Rad2p	DNA endonuclease activity endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity single-stranded DNA endodeoxyribonuclease activity catalytic activity DNA nuclease activity cation binding ion binding binding metal ion binding DNA endonuclease activity endonuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA nuclease activity catalytic activity, acting on a nucleic acid hydrolase activity single-stranded DNA endodeoxyribonuclease activity catalytic activity DNA nuclease activity cation binding ion binding binding metal ion binding small molecule binding DNA binding single-stranded DNA binding nucleic acid binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II biosynthetic process metabolic process cellular process macromolecule metabolic process cellular response to stimulus response to stimulus DNA metabolic process cellular response to stress nucleotide-excision repair DNA damage response response to stress DNA repair	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleotide-excision repair factor 3 complex nucleus nuclear protein-containing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle nucleotide-excision repair complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F	IPR006086	XPG-I domain	Domain
A, B, E, F	IPR001044	XPG/Rad2 endonuclease, eukaryotes	Family
A, B, E, F	IPR029060	PIN-like domain superfamily	Homologous Superfamily
A, B, E, F	IPR036279	5'-3' exonuclease, C-terminal domain superfamily	Homologous Superfamily
A, B, E, F	IPR008918	Helix-hairpin-helix motif, class 2	Conserved Site
A, B, E, F	IPR019974	XPG conserved site	Conserved Site
A, B, E, F	IPR006085	XPG, N-terminal	Domain
A, B, E, F	IPR006084	XPG/Rad2 endonuclease	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.