4PSO | pdb_00004pso

Crystal structure of apeThermo-DBP-RP2 bound to ssDNA dT10

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H [auth I]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
H [auth I]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
G [auth H]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
F [auth G]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
E [auth F]	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Thermo-DBP-RP2, C-terminal domain-like	8055816	3002320	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ThermoDBP N-terminal DNA-binding domain-like	8055795	3002315	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H [auth I]	Hemagglutinin	e4psoI1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
G [auth H]	Hemagglutinin	e4psoH1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
F [auth G]	Hemagglutinin	e4psoG1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
E [auth F]	Hemagglutinin	e4psoF1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
D	Hemagglutinin	e4psoD1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
C	Hemagglutinin	e4psoC1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
B	Hemagglutinin	e4psoB1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)
A	Hemagglutinin	e4psoA1	A: alpha bundles	X: Outer membrane meander beta-barrels	H: Porins	T: Porin	F: Hemagglutinin	ECOD (develop294)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	PF10015	ThermoDBP-related, archaea (ThermoDBP-RP_arch)	ThermoDBP-related, archaea	-	Family
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	PF20754	Thermo-DBP-RP2 C-terminal domain (Thermo-DBP)	Thermo-DBP-RP2 C-terminal domain	This domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-te ...	This domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-terminal domain (this entry) is composed of a five-stranded, anti-parallel beta sheet sandwiched between two alpha helices [1].	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	IPR049325	Thermo-DBP-RP2-like, C-terminal domain	Domain
A, B, C, D, E [auth F], A, B, C, D, E [auth F], F [auth G], G [auth H], H [auth I]	IPR017140	ThermoDBP-related, archaea	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.