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 4PSN | pdb_00004psn

Crystal structure of apeThermo-DBP-RP2

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyThermo-DBP-RP2, C-terminal domain-like 8055816 3002320 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyThermoDBP N-terminal DNA-binding domain-like 8055795 3002315 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyThermoDBP N-terminal DNA-binding domain-like 8055795 3002315 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyThermo-DBP-RP2, C-terminal domain-like 8055816 3002320 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyThermoDBP N-terminal DNA-binding domain-like 8055795 3002315 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyThermo-DBP-RP2, C-terminal domain-like 8055816 3002320 SCOP2B (2022-06-29)
ASCOP2 FamilyThermoDBP N-terminal DNA-binding domain-like 8051369 4007336 SCOP2 (2022-06-29)
ASCOP2 FamilyThermo-DBP-RP2, C-terminal domain-like 8055815 4007657 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyThermoDBP N-terminal DNA-binding domain-like 8055795 3002315 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyThermo-DBP-RP2, C-terminal domain-like 8055816 3002320 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DHemagglutinine4psnD1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: HemagglutininECOD (v295.2)
CThermoDBP-RP_arche4psnC1 A: alpha arraysX: P-loop domains-likeH: ssDNA-binding protein ThermoDBP-relatedT: ssDNA-binding protein ThermoDBP-relatedF: ThermoDBP-RP_archECOD (v295.2)
CThermo-DBPe4psnC2 A: alpha arraysX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: Thermo-DBPECOD (v295.2)
BHemagglutinine4psnB1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: HemagglutininECOD (v295.2)
AHemagglutinine4psnA1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: HemagglutininECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF10015ThermoDBP-related, archaea (ThermoDBP-RP_arch)ThermoDBP-related, archaea- Family
A, B, C, D
PF20754Thermo-DBP-RP2 C-terminal domain (Thermo-DBP)Thermo-DBP-RP2 C-terminal domainThis domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-te ...This domain is found in proteins from archaea, including ThermoDBP- related protein (ThermoDBP-RP) 2 from hyperthermophilic crenarchaea. This protein shows great affinity in vitro for single-stranded DNA and consists of two globular domains. The C-terminal domain (this entry) is composed of a five-stranded, anti-parallel beta sheet sandwiched between two alpha helices [1].
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR049325Thermo-DBP-RP2-like, C-terminal domainDomain
A, B, C, D
IPR017140ThermoDBP-related, archaeaDomain