4POS
Structure of Human Polyomavirus 9 VP1 pentamer in complex with 3'-sialyllactosamine
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
G | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
H | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
F | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
I | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
J | SCOP2B Superfamily | Group I dsDNA viruses | 8081595 | 3000939 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Polyoma_coat | e4posA1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
B | Polyoma_coat | e4posB1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
C | Polyoma_coat | e4posC1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
D | Polyoma_coat | e4posD1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
G | Polyoma_coat | e4posG1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
H | Polyoma_coat | e4posH1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
E | Polyoma_coat | e4posE1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
F | Polyoma_coat | e4posF1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
I | Polyoma_coat | e4posI1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
J | Polyoma_coat | e4posJ1 | A: beta sandwiches | X: jelly-roll | H: Nucleoplasmin-like/VP (viral coat and capsid proteins) (From Topology) | T: Nucleoplasmin-like/VP (viral coat and capsid proteins) | F: Polyoma_coat | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
B | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
C | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
D | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
G | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
H | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
E | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
F | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
I | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
J | 2.60.175.10 | Mainly Beta | Sandwich | Polyomavirus Vp1 | Chain A | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
VP1 |