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 4PNE | pdb_00004pne

Crystal Structure of the [4+2]-Cyclase SpnF

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyMycolic acid cyclopropane synthase 8100449 4003320 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8100450 3000118 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8100450 3000118 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BThymidylat_synte4pneB1 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: Thymidylat_syntECOD (v295.2)
APolyoma_coate4pneA1 A: alpha arraysX: Four-helical up-and-down bundleH: Thymidylate synthase/dCMP hydroxymethylaseT: Thymidylate synthase/dCMP hydroxymethylaseF: Polyoma_coatECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
A3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Methyltransferase-like protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR050447Erg6/SMT methyltransferaseFamily
A, B
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B
IPR013216Methyltransferase type 11Domain