Annotations: 4PFM

SHEWANELLA BENTHICA DHDPS WITH LYSINE AND PYRUVATE

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4pfmb_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Shewanella benthica KT99 ) [TaxId: 314608 ],	SCOPe (2.08)
A	d4pfma_	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	automated matches	automated matches	(Shewanella benthica KT99 ) [TaxId: 314608 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Aldolase	8059129	3000445	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Aldolase	8059129	3000445	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DUF4847	e4pfmB1	A: alpha arrays	X: beta-propeller-like	H: beta-propeller	T: Nucleic acid-binding protein	F: DUF4847	ECOD (v295.2)
A	DUF4847	e4pfmA1	A: alpha arrays	X: beta-propeller-like	H: beta-propeller	T: Nucleic acid-binding protein	F: DUF4847	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	4-hydroxy-tetrahydrodipicolinate synthase	4-hydroxy-tetrahydrodipicolinate synthase activity amine-lyase activity lyase activity catalytic activity carbon-nitrogen lyase activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR020624	Schiff base-forming aldolase, conserved site	Conserved Site
A, B	IPR005263	4-hydroxy-tetrahydrodipicolinate synthase, DapA	Family
A, B	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A, B	IPR020625	Schiff base-forming aldolase, active site	Active Site
A, B	IPR002220	DapA-like	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, B	KPI	Parent Component: LYS : AA0287 : N6-pyruvic acid 2-iminyl-L-lysine MOD:00292