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 4PCA | pdb_00004pca

X-ray crystal structure of an O-methyltransferase from Anaplasma phagocytophilum bound to SAH and Manganese

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd4pcad1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases automated matches automated matches (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Dd4pcad2 Artifacts Tags Tags Tags N-terminal Tags (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Cd4pcac1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases automated matches automated matches (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Cd4pcac2 Artifacts Tags Tags Tags N-terminal Tags (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Bd4pcab1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases automated matches automated matches (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Bd4pcab2 Artifacts Tags Tags Tags N-terminal Tags (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Ad4pcaa1 Alpha and beta proteins (a/b) S-adenosyl-L-methionine-dependent methyltransferases S-adenosyl-L-methionine-dependent methyltransferases automated matches automated matches (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)
Ad4pcaa2 Artifacts Tags Tags Tags N-terminal Tags (Anaplasma phagocytophilum str. HGE1 ) [TaxId: 1217107 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8085406 3000118 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8085406 3000118 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8085406 3000118 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyS-adenosyl-L-methionine-dependent methyltransferases 8085406 3000118 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DHormone_recepe4pcaD1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: Hormone_recepECOD (v295.2)
CHormone_recepe4pcaC1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: Hormone_recepECOD (v295.2)
BHormone_recepe4pcaB1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: Hormone_recepECOD (v295.2)
AHormone_recepe4pcaA1 A: alpha arraysX: HTHH: HTHT: winged helix domainF: Hormone_recepECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
C3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
B3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)
A3.40.50.150 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold Vaccinia Virus protein VP39CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
O-methyltransferase family protein - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
A, B, C, D
IPR050362Cation-dependent O-methyltransferaseFamily
A, B, C, D
IPR002935Class I-like SAM-dependent O-methyltransferaseFamily