4PAR
The 5-Hydroxymethylcytosine-Specific Restriction Enzyme AbaSI in a Complex with Product-like DNA
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E [auth B] | EUF07529 | e4parB2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: EUF07529 | ECOD (1.6) |
E [auth B] | YcjD_like | e4parB1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: YcjD_like | ECOD (1.6) |
F [auth A] | EUF07529 | e4parA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: EUF07529 | ECOD (1.6) |
F [auth A] | YcjD_like | e4parA2 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: YcjD_like | ECOD (1.6) |
G [auth C] | EUF07529 | e4parC2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: EUF07529 | ECOD (1.6) |
G [auth C] | YcjD_like | e4parC1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: YcjD_like | ECOD (1.6) |
H [auth D] | EUF07529 | e4parD2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: PUA domain | F: EUF07529 | ECOD (1.6) |
H [auth D] | YcjD_like | e4parD1 | A: a/b three-layered sandwiches | X: Restriction endonuclease-like | H: Restriction endonuclease-like (From Topology) | T: Restriction endonuclease-like | F: YcjD_like | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
E [auth B], F [auth A], G [auth C], H [auth D] | PF21598 | Restriction endonuclease PvuRts1 I-like, N-terminal (PvuRts1I-like_N) | Restriction endonuclease PvuRts1 I-like, N-terminal | This domain is found at the N-terminal end of Restriction endonuclease PvuRts1 I from Proteus vulgaris and similar bacterial sequences. PvuRts1I a modification-dependent endonuclease with high selectivity for 5-hydroxymethylcytosine, an epigenetic m ... | Domain |
E [auth B], F [auth A], G [auth C], H [auth D] | PF18491 | SET and RING associated domain (SRA) | SET and RING associated domain | This is the C-terminal domain found in PvuRts1I, a modification-dependent restriction endonuclease that recognizes 5-hydroxymethylcytosine (5hmC) as well as 5-glucosylhydroxymethylcytosine (5ghmC) in double-stranded DNA in bacteria. Structural analys ... | Domain |