Annotations: 4P7I

Crystal structure of the Merlin FERM/DCAF1 complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4p7ib2	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d4p7ib3	All beta proteins	PH domain-like barrel	PH domain-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
B	d4p7ib1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d4p7ia2	All alpha proteins	Acyl-CoA binding protein-like	Second domain of FERM	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d4p7ia3	All beta proteins	PH domain-like barrel	PH domain-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d4p7ia1	Alpha and beta proteins (a+b)	beta-Grasp (ubiquitin-like)	Ubiquitin-like	automated matches	automated matches	Mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	FERM central domain-like	8039700	3001227	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ubiquitin-like	8039704	3000157	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	FERM central domain-like	8039700	3001227	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ubiquitin-like	8039704	3000157	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	DPPIV_N	e4p7iB1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: DPPIV_N	ECOD (v294.1)
A	DPPIV_N	e4p7iA1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: DPPIV_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
B	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
B	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)
A	3.10.20.90	Alpha Beta	Roll	Ubiquitin-like (UB roll)	Phosphatidylinositol 3-kinase Catalytic Subunit	CATH (4.3.0)
A	1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein		CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF09379	FERM N-terminal domain (FERM_N)	FERM N-terminal domain	This domain is the N-terminal ubiquitin-like structural domain of the FERM domain.	Domain
A, B	PF09380	FERM C-terminal PH-like domain (FERM_C)	FERM C-terminal PH-like domain		Domain
A, B	PF00373	FERM central domain (FERM_M)	FERM central domain	This domain is the central structural domain of the FERM domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	Protein VPRBP	protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H2AT120 kinase activity histone modifying activity histone H2A kinase activity catalytic activity histone kinase activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein serine/threonine kinase activity catalytic activity, acting on a protein kinase activity protein kinase activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups histone H2AT120 kinase activity histone modifying activity histone H2A kinase activity catalytic activity histone kinase activity ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity protein serine kinase activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding DNA-binding transcription factor binding nuclear estrogen receptor binding	developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development developmental process multicellular organismal process cellular developmental process hemopoiesis B cell activation cell activation cell development mononuclear cell differentiation lymphocyte differentiation lymphocyte activation leukocyte activation B cell differentiation cell differentiation immune system process anatomical structure development cellular process leukocyte differentiation regulation of cellular process catabolic process positive regulation of protein metabolic process positive regulation of biological process macromolecule catabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of cellular process regulation of biological process regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process protein catabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process metabolic process macromolecule metabolic process regulation of metabolic process regulation of protein catabolic process protein ubiquitination macromolecule modification post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process multicellular organism development regulation of growth growth cell competition in a multicellular organism negative regulation of biological process RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II negative regulation of metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription negative regulation of RNA metabolic process immune system development somatic cell DNA recombination DNA recombination DNA metabolic process V(D)J recombination somatic diversification of immune receptors via germline recombination within a single locus somatic diversification of immune receptors system development	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen nucleolus fibrillar center cullin-RING ubiquitin ligase complex protein-containing complex ubiquitin ligase complex catalytic complex Cul4-RING E3 ubiquitin ligase complex transferase complex intracellular protein-containing complex
A, B	Merlin	protein binding binding protein domain specific binding cell adhesion molecule binding protein-containing complex binding integrin binding signaling receptor binding cytoskeletal protein binding actin binding beta-catenin binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development epithelium development cellular developmental process sensory organ development eye development developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development epithelium development cellular developmental process sensory organ development eye development visual system development tissue development epithelial cell differentiation cell differentiation camera-type eye development lens fiber cell differentiation cellular process sensory system development lens development in camera-type eye regulation of multicellular organismal development regulation of biological process regulation of cellular process regulation of developmental process biological regulation cell development regulation of neurogenesis regulation of cell differentiation regulation of cell development regulation of nervous system development neurogenesis regulation of multicellular organismal process cell population proliferation regulation of cell population proliferation neural precursor cell proliferation regulation of neural precursor cell proliferation regulation of cellular component organization organelle assembly regulation of cellular component biogenesis regulation of organelle organization cellular component biogenesis cellular component organization organelle organization cellular component assembly regulation of organelle assembly cellular component organization or biogenesis regulation of growth negative regulation of biological process growth negative regulation of cell growth regulation of cell growth cell growth negative regulation of growth negative regulation of cellular process regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death actin cytoskeleton organization actin filament-based process cytoskeleton organization positive regulation of biological process positive regulation of developmental process positive regulation of cell differentiation positive regulation of cellular process cellular response to stimulus hippo signaling regulation of signaling response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication regulation of hippo signaling signal transduction regulation of cell adhesion negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion regulation of cell-cell adhesion regulation of localization localization regulation of protein localization macromolecule localization protein localization to organelle regulation of protein localization to nucleus intracellular protein localization protein localization to nucleus Schwann cell proliferation gliogenesis glial cell proliferation regulation of protein stability regulation of biological quality formation of primary germ layer mesoderm morphogenesis embryonic morphogenesis embryo development gastrulation tissue morphogenesis anatomical structure morphogenesis anatomical structure formation involved in morphogenesis mesoderm formation mesoderm development forebrain development pallium development telencephalon development hippocampus development limbic system development odontogenesis of dentin-containing tooth odontogenesis animal organ morphogenesis regulation of gliogenesis positive regulation of protein localization to early endosome protein localization to endosome protein localization to early endosome regulation of protein localization to endosome positive regulation of protein localization positive regulation of protein localization to endosome regulation of protein localization to early endosome regulation of cell shape cell morphogenesis regulation of cell morphogenesis regulation of anatomical structure morphogenesis cell surface receptor signaling pathway via STAT negative regulation of signaling negative regulation of cell communication regulation of receptor signaling pathway via JAK-STAT negative regulation of receptor signaling pathway via JAK-STAT cell surface receptor signaling pathway negative regulation of response to stimulus negative regulation of signal transduction negative regulation of receptor signaling pathway via STAT regulation of receptor signaling pathway via STAT cell surface receptor signaling pathway via JAK-STAT regulation of stem cell proliferation stem cell proliferation negative regulation of intracellular signal transduction intracellular signaling cassette regulation of MAPK cascade MAPK cascade negative regulation of MAPK cascade negative regulation of cell population proliferation positive regulation of early endosome to late endosome transport cellular localization transport vesicle-mediated transport intercellular transport establishment of localization in cell positive regulation of intracellular transport regulation of intracellular transport regulation of transport intracellular transport regulation of vesicle-mediated transport establishment of localization endosomal transport vesicle-mediated transport between endosomal compartments regulation of early endosome to late endosome transport early endosome to late endosome transport positive regulation of transport regulation of cellular localization cell cycle regulation of cell cycle positive regulation of organelle organization regulation of cytoskeleton organization regulation of actin filament-based process positive regulation of cellular component organization regulation of actin filament bundle assembly positive regulation of actin filament bundle assembly actin filament bundle organization positive regulation of stress fiber assembly stress fiber assembly regulation of actin filament organization actomyosin structure organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization actin filament organization positive regulation of supramolecular fiber organization regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization regulation of actin cytoskeleton organization actin filament bundle assembly regulation of supramolecular fiber organization supramolecular fiber organization cell junction organization cell-cell junction organization ectoderm development	cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium apical part of cell intracellular anatomical structure cytoplasm cytosol neuron projection cell-cell junction adherens junction anchoring junction cell junction cell projection cellular anatomical structure cell leading edge plasma membrane bounded cell projection lamellipodium apical part of cell intracellular anatomical structure cytoplasm cytosol neuron projection cell-cell junction adherens junction anchoring junction cell junction intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle ruffle perinuclear region of cytoplasm cell body actin-based cell projection filopodium membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen cell periphery plasma membrane membrane cell division site cleavage furrow plasma membrane region protein-containing complex early endosome endosome intracellular vesicle endomembrane system cytoplasmic vesicle vesicle cell cortex cortical cytoskeleton actin cytoskeleton cortical actin cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR016024	Armadillo-type fold	Homologous Superfamily
C, D	IPR011989	Armadillo-like helical	Homologous Superfamily
C, D	IPR006594	LIS1 homology motif	Conserved Site
C, D	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily
C, D	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
C, D	IPR033270	VPRBP/DCAF1 family	Family
A, B	IPR000299	FERM domain	Domain
A, B	IPR019748	FERM central domain	Domain
A, B	IPR018980	FERM, C-terminal PH-like domain	Domain
A, B	IPR000798	Ezrin/radixin/moesin-like	Family
A, B	IPR008954	Moesin tail domain superfamily	Homologous Superfamily
A, B	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A, B	IPR011259	Ezrin/radixin/moesin, C-terminal	Domain
A, B	IPR019747	FERM conserved site	Conserved Site
A, B	IPR018979	FERM, N-terminal	Domain
A, B	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A, B	IPR041789	ERM family, FERM domain C-lobe	Domain
A, B	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B	IPR046810	Ezrin/radixin/moesin, alpha-helical domain	Domain
A, B	IPR019749	Band 4.1 domain	Domain
A, B	IPR011174	Ezrin/radixin/moesin	Family
A, B	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C, D	: Q9Y4B6	allergic rhinitis hepatocellular carcinoma ovarian cancer breast cancer medulloblastoma psoriasis cutaneous lupus erythematosus osteosarcoma tuberculosis