4P5E

CRYSTAL STRUCTURE OF HUMAN DNPH1 (RCL) WITH 6-NAPHTHYL-PURINE-RIBOSIDE-MONOPHOSPHATE

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF05014	e4p5eA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: PF05014	ECOD (1.6)
B	PF05014	e4p5eB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: N-deoxyribosyltransferase (From Topology)	T: N-deoxyribosyltransferase	F: PF05014	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.450	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF05014	Nucleoside 2-deoxyribosyltransferase (Nuc_deoxyrib_tr)	Nucleoside 2-deoxyribosyltransferase	Nucleoside 2-deoxyribosyltransferase EC:2.4.2.6 catalyses the cleavage of the glycosidic bonds of 2`-deoxyribonucleosides [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	2'-deoxynucleoside 5'-phosphate N-hydrolase 1	identical protein binding protein binding binding protein homodimerization activity protein dimerization activity hydrolase activity, acting on glycosyl bonds hydrolase activity deoxyribonucleoside 5'-monophosphate N-glycosidase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	regulation of biological process regulation of growth regulation of cellular process regulation of cellular component organization positive regulation of biological process biological regulation growth positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular process cellular component organization or biogenesis regulation of biological process regulation of growth regulation of cellular process regulation of cellular component organization positive regulation of biological process biological regulation growth positive regulation of cell growth regulation of cell growth cell growth cellular component organization positive regulation of growth cellular process cellular component organization or biogenesis positive regulation of cellular process deoxyribonucleoside monophosphate catabolic process catabolic process organophosphate catabolic process nucleoside phosphate catabolic process nucleobase-containing compound metabolic process cellular catabolic process organic substance metabolic process heterocycle metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process nitrogen compound metabolic process small molecule metabolic process nucleoside monophosphate metabolic process phosphorus metabolic process nucleoside phosphate metabolic process nucleoside monophosphate catabolic process cellular metabolic process cellular nitrogen compound metabolic process primary metabolic process aromatic compound catabolic process deoxyribonucleoside monophosphate metabolic process cellular nitrogen compound catabolic process organic cyclic compound catabolic process nucleobase-containing compound catabolic process organic cyclic compound metabolic process organophosphate metabolic process heterocycle catabolic process metabolic process organic substance catabolic process cellular aromatic compound metabolic process purine nucleotide metabolic process nucleotide catabolic process organonitrogen compound catabolic process purine nucleotide catabolic process organonitrogen compound metabolic process purine-containing compound catabolic process nucleotide metabolic process purine-containing compound metabolic process glycosyl compound metabolic process cellular biosynthetic process organonitrogen compound biosynthetic process carbohydrate derivative metabolic process nucleoside biosynthetic process cellular nitrogen compound biosynthetic process organic substance biosynthetic process cellular metabolic compound salvage carbohydrate derivative biosynthetic process glycosyl compound biosynthetic process small molecule biosynthetic process nucleoside salvage nucleobase-containing compound biosynthetic process heterocycle biosynthetic process nucleoside metabolic process nucleobase-containing small molecule biosynthetic process biosynthetic process aromatic compound biosynthetic process organic cyclic compound biosynthetic process developmental process epithelium development cellular developmental process cell differentiation anatomical structure development tissue development epithelial cell differentiation	extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space cellular anatomical entity vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol intracellular organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR007710	Nucleoside 2-deoxyribosyltransferase	Family
A, B	IPR028607	2-deoxynucleoside 5-phosphate N-hydrolase 1, DNPH1	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: O43598	lung cancer psoriasis malignant ependymoma X-linked mixed deafness with perilymphatic gusher ovarian cancer

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.