Annotations: 4P2S

Alanine Scanning Mutagenesis Identifies an Asparagine-Arginine-Lysine Triad Essential to Assembly of the Shell of the Pdu Microcompartment

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
I	d4p2si_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
H	d4p2sh_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
G	d4p2sg_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
F	d4p2sf_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
E	d4p2se_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
D	d4p2sd_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
C	d4p2sc_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
B	d4p2sb_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)
A	d4p2sa_	Alpha and beta proteins (a+b)	Ferredoxin-like	CcmK-like	automated matches	automated matches	(Salmonella enterica subsp. enterica serovar Saintpaul str. SARA26 ) [TaxId: 702982 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
I	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CcmK-like	8081340	3001326	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	PhyR_sigma-like	e4p2sI1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
H	PhyR_sigma-like	e4p2sH1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
G	PhyR_sigma-like	e4p2sG1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
F	PhyR_sigma-like	e4p2sF1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
E	PhyR_sigma-like	e4p2sE1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
D	PhyR_sigma-like	e4p2sD1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
C	PhyR_sigma-like	e4p2sC1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
B	PhyR_sigma-like	e4p2sB1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)
A	PhyR_sigma-like	e4p2sA1	A: alpha arrays	X: P-loop domains-like	H: P-loop domains-related	T: P-loop containing nucleoside triphosphate hydrolases	F: PhyR_sigma-like	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
H	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
G	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
F	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
E	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
D	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
C	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
B	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)
A	3.30.70.1710	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	BMC (bacterial microcompartment) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I	PF00936	BMC domain (BMC)	BMC domain	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric struc ...	Bacterial microcompartments are primitive organelles composed entirely of protein subunits. The prototypical bacterial microcompartment is the carboxysome, a protein shell for sequestering carbon fixation reactions. These proteins for hexameric structure [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	Putative propanediol utilization protein PduA	-	diol catabolic process polyol metabolic process alcohol catabolic process catabolic process polyol catabolic process alcohol metabolic process glycol metabolic process diol metabolic process 1,2-propanediol catabolic process glycol catabolic process small molecule metabolic process metabolic process cellular process small molecule catabolic process	intracellular organelle propanediol degradation polyhedral organelle bacterial microcompartment cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR020808	Bacterial microcompartments protein, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR000249	Bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR050575	Bacterial microcompartment shell	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR044872	CcmK/CsoS1, bacterial microcompartment domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR037233	CcmK-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.