4ON3 | pdb_00004on3

Crystal structure of human sorting nexin 10 (SNX10)

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	SNF	e4on3B1	A: a/b three-layered sandwiches	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: SNF	ECOD (v294.1)
A	SNF	e4on3A1	A: a/b three-layered sandwiches	X: Mitochondrial mTERF-like	H: Transcription activator-like effector (TALE)	T: Transcription activator-like effector (TALE)	F: SNF	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	CATH (4.3.0)
A	3.30.1520.10	Alpha Beta	2-Layer Sandwich	PX Domain	Phox-like domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00787	PX domain (PX)	PX domain	PX domains bind to phosphoinositides.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Sorting nexin-10	binding phospholipid binding lipid binding phosphatidylinositol phosphate binding 1-phosphatidylinositol binding ATPase binding protein binding enzyme binding	localization multicellular organismal process system process digestion secretion transport digestive system process acid secretion gastric acid secretion establishment of localization cellular homeostasis homeostatic process protein localization to cilium protein localization to organelle localization multicellular organismal process system process digestion secretion transport digestive system process acid secretion gastric acid secretion establishment of localization cellular homeostasis homeostatic process protein localization to cilium protein localization to organelle macromolecule localization intracellular protein localization protein localization to microtubule cytoskeleton protein localization to cytoskeleton protein localization to microtubule organizing center protein localization to centrosome import into cell cellular process endocytosis vesicle-mediated transport developmental process anatomical structure morphogenesis tooth eruption anatomical structure development odontogenesis animal organ development animal organ morphogenesis bone maturation bone mineralization bone mineralization involved in bone maturation developmental maturation tissue development multicellular organism development skeletal system development ossification anatomical structure maturation biomineral tissue development ossification involved in bone maturation animal organ maturation bone development system development organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell intracellular protein transport inorganic ion homeostasis chemical homeostasis monoatomic ion homeostasis calcium ion homeostasis monoatomic cation homeostasis ruffle organization ruffle assembly vesicle organization myeloid leukocyte differentiation cellular developmental process hemopoiesis cell development myeloid cell differentiation cell differentiation osteoclast differentiation leukocyte differentiation multicellular organismal-level homeostasis tissue remodeling bone remodeling anatomical structure homeostasis tissue homeostasis bone resorption response to peptide response to stimulus response to chemical response to cytokine response to leukemia inhibitory factor cellular response to cytokine stimulus cellular response to leukemia inhibitory factor endosome organization endomembrane system organization	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton endosome membrane membrane-bounded organelle membrane endosome intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton endosome membrane membrane-bounded organelle membrane endosome intracellular vesicle extrinsic component of organelle membrane extrinsic component of endosome membrane intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle membrane bounding membrane of organelle vesicle membrane cytoplasmic vesicle cytoplasm vesicle organelle membrane extrinsic component of membrane secretory granule secretory vesicle nucleus apical part of cell apical cytoplasm endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR001683	Phox homology	Domain
A, B	IPR043544	Sorting nexin-10/11	Family
A, B	IPR036871	PX domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9Y5X0	autosomal recessive osteopetrosis 8 osteopetrosis liver cancer malignant ependymoma metabolic syndrome X pancreatic intraductal papillary-mucinous carcinoma astrocytic tumor Pick disease Sjogren syndrome cutaneous lupus erythematosus head and neck cancer Infantile malignant osteopetrosis large cell medulloblastoma lung cancer malignant mesothelioma autosomal recessive osteopetrosis 8 osteopetrosis liver cancer malignant ependymoma metabolic syndrome X pancreatic intraductal papillary-mucinous carcinoma astrocytic tumor Pick disease Sjogren syndrome cutaneous lupus erythematosus head and neck cancer Infantile malignant osteopetrosis large cell medulloblastoma lung cancer malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia atypical teratoid rhabdoid tumor primitive neuroectodermal tumor breast cancer ulcerative colitis gastric carcinoma hydrocephalus interstitial cystitis malignant colon neoplasm medulloblastoma oligodendroglioma pancreatic ductal adenocarcinoma Parkinson disease autosomal recessive osteopetrosis psoriasis chronic obstructive pulmonary disease glioblastoma IgA glomerulonephritis invasive ductal breast carcinoma liver neoplasm

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A, B	OPM	Monotopic/peripheral	Alpha + Beta monotopic/peripheral	PX domain	PX domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.