4OKQ | pdb_00004okq

Crystal structure of the single-stranded RNA binding protein HutP from Geobacillus thermodenitrificans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4okqb_	Alpha and beta proteins (a+b)	Hut operon positive regulatory protein HutP	Hut operon positive regulatory protein HutP	Hut operon positive regulatory protein HutP	automated matches	(Geobacillus thermodenitrificans NG80-2 ) [TaxId: 420246 ],	SCOPe (2.08)
A	d4okqa_	Alpha and beta proteins (a+b)	Hut operon positive regulatory protein HutP	Hut operon positive regulatory protein HutP	Hut operon positive regulatory protein HutP	automated matches	(Geobacillus thermodenitrificans NG80-2 ) [TaxId: 420246 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Hut operon positive regulatory protein HutP	8076682	3001538	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Hut operon positive regulatory protein HutP	8076682	3001538	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HutP	e4okqB1	A: a+b three layers	X: Hut operon positive regulatory protein HutP (From Topology)	H: Hut operon positive regulatory protein HutP (From Topology)	T: Hut operon positive regulatory protein HutP	F: HutP	ECOD (1.6)
A	HutP	e4okqA1	A: a+b three layers	X: Hut operon positive regulatory protein HutP (From Topology)	H: Hut operon positive regulatory protein HutP (From Topology)	T: Hut operon positive regulatory protein HutP	F: HutP	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.1510.10	Alpha Beta	3-Layer(aba) Sandwich	Hut operon positive regulatory protein HutP	Hut operon regulatory protein HutP	CATH (4.3.0)
A	3.40.1510.10	Alpha Beta	3-Layer(aba) Sandwich	Hut operon positive regulatory protein HutP	Hut operon regulatory protein HutP	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Hut operon positive regulatory protein	RNA binding binding nucleic acid binding mRNA binding	aromatic amino acid metabolic process L-histidine metabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process imidazole-containing compound metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process aromatic amino acid metabolic process L-histidine metabolic process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process primary metabolic process organic acid metabolic process imidazole-containing compound metabolic process alpha-amino acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process metabolic process cellular process small molecule metabolic process regulation of biosynthetic process regulation of biological process regulation of cellular process biological regulation positive regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process positive regulation of macromolecule biosynthetic process regulation of gene expression positive regulation of metabolic process biosynthetic process positive regulation of gene expression positive regulation of biosynthetic process regulation of macromolecule biosynthetic process positive regulation of macromolecule metabolic process macromolecule metabolic process regulation of metabolic process positive regulation of cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR023552	Hut operon regulatory protein HutP, bacillales	Family
A, B	IPR015111	Hut operon regulatory protein HutP	Family
A, B	IPR036482	Hut operon regulatory protein HutP superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.