4OIT | pdb_00004oit

Structure, interactions and evolutionary implications of a domain-swapped lectin dimer from Mycobacterium smegmatis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4oita1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
A	d4oita2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
D	d4oitd1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
D	d4oitd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
C	d4oitc1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
C	d4oitc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d4oitb1	All beta proteins	beta-Prism II	alpha-D-mannose-specific plant lectins	automated matches	automated matches	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)
B	d4oitb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Mycolicibacterium smegmatis MC2 155 ) [TaxId: 246196 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	alpha-D-mannose-specific plant lectins	8079846	4002774	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha-D-mannose-specific plant lectins	8079847	3001730	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RNase_T	e4oitA1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases	H: alpha/beta-Hydrolases	T: alpha/beta-Hydrolases	F: RNase_T	ECOD (v294.1)
D	RNase_T	e4oitD1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases	H: alpha/beta-Hydrolases	T: alpha/beta-Hydrolases	F: RNase_T	ECOD (v294.1)
C	RNase_T	e4oitC1	A: a/b three-layered sandwiches	X: alpha/beta-Hydrolases	H: alpha/beta-Hydrolases	T: alpha/beta-Hydrolases	F: RNase_T	ECOD (v294.1)
B	Ribosomal_S8e	e4oitB1	A: a/b three-layered sandwiches	X: Immunoglobulin-like beta-sandwich	H: Ribosomal protein L14-related	T: Ribosomal protein L14-related	F: Ribosomal_S8e	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
D	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
C	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)
B	2.90.10.10	Mainly Beta	Orthogonal Prism	Agglutinin, subunit A	Bulb-type lectin domain	CATH (4.3.0)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR001480	Bulb-type lectin domain	Domain
A, B, C, D	IPR036779	LysM domain superfamily	Homologous Superfamily
A, B, C, D	IPR052196	Bacterial Potassium Binding	Family
A, B, C, D	IPR036426	Bulb-type lectin domain superfamily	Homologous Superfamily
A, B, C, D	IPR018392	LysM domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.