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 4ODT | pdb_00004odt

Fab Structure of lipid A-specific antibody S1-15 in complex with lipid A carbohydrate backbone

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
B [auth L]d4odtl2 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin C1 set domains (antibody constant domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
B [auth L]d4odtl1 All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin automated matches automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)
A [auth H]d4odth_ All beta proteins Immunoglobulin-like beta-sandwich Immunoglobulin V set domains (antibody variable domain-like) automated matches (Mus musculus ) [TaxId: 10090 ], SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth L]BBEe4odtL1 A: alpha arraysX: Single-stranded right-handed beta-helixH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: BBEECOD (v295.2)
A [auth H]BBEe4odtH2 A: alpha arraysX: Single-stranded right-handed beta-helixH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: BBEECOD (v295.2)
A [auth H]EF-hand_1, EF-hand_6, EF-hand_7e4odtH1 A: alpha arraysX: Lipocalins/StreptavidinH: SAM/DNA-glycosylaseT: SAM domain-likeF: EF-hand_1, EF-hand_6, EF-hand_7ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B [auth L]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)
A [auth H]2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

ChainProtein NameDescriptionOrganism NameGene Allele Name(s)Domain Name(s)Receptor TypeReceptor DescriptionProvenance Source
B [auth L]S1-15 Fab L-KAPPA Mus musculus (house mouse) IGKV10-96*01, IGKJ1*01, IGKC*01, IGKC*02 V-DOMAIN V-KAPPA, C-DOMAIN C-KAPPA IG FAB-GAMMA-2B_KAPPA IMGT (202638-0)
A [auth H]S1-15 Fab VH-CH1 Mus musculus (house mouse) IGHV10-1*02, IGHJ3*01, IGHG2B*01, IGHG2B*02 V-DOMAIN VH, C-DOMAIN CH1 IG FAB-GAMMA-2B_KAPPA IMGT (202638-0)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
B [auth L]Light ChainIGKV10 KappapolysaccharideSAbDab (2026-10-02)
A [auth H]Heavy ChainIGHV10 -polysaccharideSAbDab (2026-10-02)