4O8L | pdb_00004o8l

Structure of sortase A from Streptococcus pneumoniae

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Sortase	8100118	3000481	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Sortase	8100118	3000481	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Sortase	8100118	3000481	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Sortase	8100118	3000481	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Internalin_N	e4o8lB1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.1)
D	Internalin_N	e4o8lD1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.1)
C	Internalin_N	e4o8lC1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.1)
A	Internalin_N	e4o8lA1	A: a/b three-layered sandwiches	X: Rubredoxin-like	H: Rubredoxin-related	T: Rubredoxin-related	F: Internalin_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
D	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
C	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)
A	2.40.260.10	Mainly Beta	Beta Barrel	Sortase	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B	PF04203	Sortase domain (Sortase)	Sortase domain	The founder member of this family is S. aureus sortase, a transpeptidase that attaches surface proteins by the threonine of an LPXTG motif to the cell wall [1].	Domain
A, C, D	PF04203	Sortase domain (Sortase)	Sortase domain	The founder member of this family is S. aureus sortase, a transpeptidase that attaches surface proteins by the threonine of an LPXTG motif to the cell wall [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Sortase	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-
A, C, D	Sortase	cysteine-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR023365	Sortase domain superfamily	Homologous Superfamily
B	IPR042007	Sortase A	Family
B	IPR005754	Sortase family	Family
A, C, D	IPR023365	Sortase domain superfamily	Homologous Superfamily
A, C, D	IPR042007	Sortase A	Family
A, C, D	IPR005754	Sortase family	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	CSO	Parent Component: CYS RESID: AA0205 PSI-MOD : L-cysteine sulfenic acid MOD:00210

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.