4O66 | pdb_00004o66

Crystal Structure of SMARCAL1 HARP substrate recognition domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	HARP	e4o66B1	A: a+b two layers	X: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	H: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	T: DNA helicase UvsW N-terminal a+b domain-related	F: HARP	ECOD (1.6)
D	HARP	e4o66D1	A: a+b two layers	X: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	H: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	T: DNA helicase UvsW N-terminal a+b domain-related	F: HARP	ECOD (1.6)
C	HARP	e4o66C1	A: a+b two layers	X: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	H: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	T: DNA helicase UvsW N-terminal a+b domain-related	F: HARP	ECOD (1.6)
A	HARP	e4o66A1	A: a+b two layers	X: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	H: DNA helicase UvsW N-terminal a+b domain-related (From Topology)	T: DNA helicase UvsW N-terminal a+b domain-related	F: HARP	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07443	HepA-related protein (HARP) (HARP)	HepA-related protein (HARP)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on a nucleic acid helicase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity hydrolase activity ATP-dependent DNA/DNA annealing activity DNA binding single-stranded DNA binding nucleic acid binding ATP-dependent activity, acting on DNA DNA/DNA annealing activity catalytic activity, acting on DNA annealing activity	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process DNA-templated DNA replication DNA-templated DNA replication maintenance of fidelity primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process DNA replication metabolic process macromolecule metabolic process replication fork processing regulation of cellular process RNA metabolic process regulation of primary metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process double-strand break repair double-strand break repair via nonhomologous end joining DNA repair	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus membrane-enclosed lumen nuclear protein-containing complex nuclear chromosome chromosome intracellular organelle lumen intracellular organelle cellular anatomical structure nuclear replisome membraneless organelle replication fork DNA replication factor A complex protein-DNA complex nuclear replication fork intracellular membraneless organelle intracellular membrane-bounded organelle organelle lumen organelle nuclear lumen replisome site of double-strand break site of DNA damage nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR000330	SNF2, N-terminal	Domain
A, B, C, D	IPR001650	Helicase, C-terminal domain-like	Domain
A, B, C, D	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
A, B, C, D	IPR049730	SNF2/RAD5-like, C-terminal helicase domain	Domain
A, B, C, D	IPR010003	HARP domain	Domain
A, B, C, D	IPR038718	SNF2-like, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.