4O0K | pdb_00004o0k

Crystal structure of 1-pyrroline-4-hydroxy-2-carboxylate deaminase from Brucella melitensis with covalently bound substrate

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyClass I aldolase 8101382 4003216 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAldolase 8101383 3000445 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ACyclotidee4o0kA1 A: a/b three-layered sandwichesX: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitH: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitT: Fe-S cluster-binding domain in nickel-iron hydrogenase small subunitF: CyclotideECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.20.20.70 Alpha Beta Alpha-Beta Barrel TIM Barrel Aldolase class ICATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Dihydrodipicolinate synthetase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR013785Aldolase-type TIM barrelHomologous Superfamily
IPR002220DapA-likeFamily

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
KPI Parent Component: LYS

RESID:  AA0287

PSI-MOD :  N6-pyruvic acid 2-iminyl-L-lysine MOD:00292