4NHF | pdb_00004nhf

Crystal structure of the soluble domain of TrwG Type IV secretion machinery from Bartonella grahamii

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d4nhff_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)
E	d4nhfe_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)
D	d4nhfd_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)
C	d4nhfc_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)
B	d4nhfb_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)
A	d4nhfa_	Alpha and beta proteins (a+b)	Cystatin-like	NTF2-like	automated matches	automated matches	(Bartonella grahamii as4aup ) [TaxId: 634504 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	NTF2-like	8078091	3000472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	NTF2-like	8078091	3000472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	NTF2-like	8078091	3000472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	NTF2-like	8078091	3000472	SCOP2B (2022-06-29)
B	SCOP2 Family	VirB8-like	8078090	4001668	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	NTF2-like	8078091	3000472	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	NTF2-like	8078091	3000472	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Thioredoxin	e4nhfF1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
E	Thioredoxin	e4nhfE1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
D	Thioredoxin	e4nhfD1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
C	Thioredoxin	e4nhfC1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
B	Thioredoxin	e4nhfB1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Thioredoxin	ECOD (v294.1)
A	Bromodomain	e4nhfA1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: Bromodomain	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.10.450.230	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	TrwG protein	cation binding ion binding binding metal ion binding small molecule binding	establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein secretion by the type IV secretion system macromolecule localization establishment of protein localization transport secretion establishment of protein localization to extracellular region export from cell protein secretion establishment of localization protein localization to extracellular region transmembrane transport localization secretion by cell protein transmembrane transport protein transport protein secretion by the type IV secretion system macromolecule localization cellular process secretion by the type IV secretion system intracellular protein localization	cellular anatomical structure endomembrane system membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR032710	NTF2-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007430	Bacterial virulence protein VirB8-like	Domain
A, B, C, D, E A, B, C, D, E, F	IPR026264	VirB8/PtlE	Unknown

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.