4NGF
Structure of human Dicer Platform-PAZ-Connector Helix cassette in complex with 17-mer siRNA having 5'-p and UU-3' ends (3.1 Angstrom resolution)
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D | PF02170 | e4ngfD1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02170 | ECOD (1.6) |
D | PF20931 | e4ngfD2 | A: a+b two layers | X: Giardia Dicer N-terminal domain (From Topology) | H: Giardia Dicer N-terminal domain (From Topology) | T: Giardia Dicer N-terminal domain | F: PF20931 | ECOD (1.6) |
A | PF02170 | e4ngfA1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02170 | ECOD (1.6) |
A | PF20931 | e4ngfA2 | A: a+b two layers | X: Giardia Dicer N-terminal domain (From Topology) | H: Giardia Dicer N-terminal domain (From Topology) | T: Giardia Dicer N-terminal domain | F: PF20931 | ECOD (1.6) |
B | PF02170 | e4ngfB1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02170 | ECOD (1.6) |
B | PF20931 | e4ngfB2 | A: a+b two layers | X: Giardia Dicer N-terminal domain (From Topology) | H: Giardia Dicer N-terminal domain (From Topology) | T: Giardia Dicer N-terminal domain | F: PF20931 | ECOD (1.6) |
C | PF02170 | e4ngfC1 | A: beta barrels | X: SH3 | H: SH3 | T: SH3 | F: PF02170 | ECOD (1.6) |
C | PF20931 | e4ngfC2 | A: a+b two layers | X: Giardia Dicer N-terminal domain (From Topology) | H: Giardia Dicer N-terminal domain (From Topology) | T: Giardia Dicer N-terminal domain | F: PF20931 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
A | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
B | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
C | 2.170.260.10 | Mainly Beta | Beta Complex | paz domain | paz domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02170 | PAZ domain (PAZ) | PAZ domain | This domain is named PAZ after the proteins Piwi Argonaut and Zwille. This domain is found in two families of proteins that are involved in post-transcriptional gene silencing. These are the Piwi family and the Dicer family, that includes the Carpel ... | Domain | |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR048513 | Dicer, partner-binding domain | Domain | |
IPR044441 | Dicer, double-stranded RNA-binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily | |
IPR006935 | Helicase/UvrB, N-terminal | Domain | |
IPR001650 | Helicase, C-terminal domain-like | Domain | |
IPR014001 | Helicase superfamily 1/2, ATP-binding domain | Domain | |
IPR005034 | Dicer dimerisation domain | Domain | |
IPR038248 | Dicer dimerisation domain superfamily | Homologous Superfamily | |
IPR000999 | Ribonuclease III domain | Domain | |
IPR003100 | PAZ domain | Domain | |
IPR048512 | Dicer, platform domain | Domain | |
IPR036389 | Ribonuclease III, endonuclease domain superfamily | Homologous Superfamily | |
IPR036085 | PAZ domain superfamily | Homologous Superfamily | |
IPR014720 | Double-stranded RNA-binding domain | Domain |