4NBI | pdb_00004nbi

D-aminoacyl-tRNA deacylase (DTD) from Plasmodium falciparum in complex with D-tyrosyl-3'-aminoadenosine at 1.86 Angstrom resolution


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4nbia_ Alpha and beta proteins (a/b) DTD-like DTD-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)
Bd4nbib_ Alpha and beta proteins (a/b) DTD-like DTD-like automated matches automated matches (Plasmodium falciparum 3D7 ) [TaxId: 36329 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyDTD-like 8074792 3000522 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyDTD-like 8074792 3000522 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARF-1e4nbiA1 A: a/b three-layered sandwichesX: dsRBD-likeH: Peptidyl-tRNA hydrolase domain-likeT: Peptidyl-tRNA hydrolase domain-likeF: RF-1ECOD (v294.1)
BDockinge4nbiB1 A: a/b three-layered sandwichesX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: DockingECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase Chain: ACATH (4.3.0)
B3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase Chain: ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02580D-Tyr-tRNA(Tyr) deacylase (Tyr_Deacylase)D-Tyr-tRNA(Tyr) deacylase- Family

InterPro: Protein Family Classification InterPro Database Homepage