4NB4 | pdb_00004nb4

Pantothenamide-bound Pantothenate kinase from Staphylococcus aureus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d4nb4h1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
H	d4nb4h2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
G	d4nb4g_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
F	d4nb4f_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
E	d4nb4e_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
D	d4nb4d_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
C	d4nb4c1	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
C	d4nb4c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
B	d4nb4b_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)
A	d4nb4a_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Actin-like ATPase domain	Fumble-like	Type II pantothenate kinase, CoaW	(Staphylococcus aureus subsp. aureus MRSA252 ) [TaxId: 282458 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8092400	3000092	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Actin-like ATPases	8034044	3000092	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	Molybdopterin	e4nb4H1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
G	Molybdopterin	e4nb4G1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
F	Molybdopterin	e4nb4F1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
E	Molybdopterin	e4nb4E1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
D	Molybdopterin	e4nb4D1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
C	Molybdopterin	e4nb4C1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
B	Molybdopterin	e4nb4B1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)
A	Molybdopterin	e4nb4A1	A: a/b three-layered sandwiches	X: Hsp90 co-chaperone CDC37 middle domain	H: Lysozyme-like	T: Lysozyme-like	F: Molybdopterin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
G	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
F	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
E	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
D	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
C	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
B	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)
A	3.30.420.40	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Type II pantothenate kinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity transferase activity catalytic activity pantothenate kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	nucleoside phosphate metabolic process coenzyme A biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process nucleoside phosphate metabolic process coenzyme A biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process phosphorus metabolic process coenzyme A metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR043129	ATPase, nucleotide binding domain	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004567	Type II pantothenate kinase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011602	Type II pantothenate kinase, bacterial	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.