4N5C | pdb_00004n5c

Crystal structure of Ypp1

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H		e4n5cH1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
G		e4n5cG1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
F		e4n5cF1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
E		e4n5cE1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
D		e4n5cD1	A: MHC antigen-recognition domain	X: MHC antigen-recognition domain	H: MHC antigen-recognition domain	T: PASTA	F:	ECOD (20:10:01)
C		e4n5cC1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
B		e4n5cB1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)
A		e4n5cA1	A: Rossmann-like	X: Rossmann-related	H: Nucleotide-binding domain	T:	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
G	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
F	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
E	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
D	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
C	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
B	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)
A	1.25.40.10	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat	Tetratricopeptide repeat domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Cargo-transport protein YPP1	-	localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization transport protein targeting establishment of protein localization to vacuole intracellular transport localization protein localization to cell periphery cellular localization protein localization to plasma membrane macromolecule localization cellular process intracellular protein localization localization within membrane protein localization to membrane establishment of protein localization transport protein targeting establishment of protein localization to vacuole intracellular transport protein localization to vacuole establishment of localization establishment of protein localization to organelle protein transport establishment of localization in cell protein localization to organelle vacuolar transport protein targeting to vacuole intracellular protein transport import into cell receptor-mediated endocytosis endocytosis vesicle-mediated transport	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol cell cortex cortical cytoskeleton intracellular membraneless organelle actin cytoskeleton cell periphery intracellular organelle endocytic patch cytoskeleton organelle membraneless organelle cortical actin cytoskeleton actin cortical patch plasma membrane membrane membrane-bounded organelle endosome intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle vesicle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR051722	Endocytosis and PI4K-regulating protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.