4N0R | pdb_00004n0r

Crystal structure of a putative glycoside hydrolase (BVU_0362) from Bacteroides vulgatus ATCC 8482 at 1.80 A resolution

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	(Trans)glycosidases	8092267	3000313	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	E set domains	8092266	3000070	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glycosyl hydrolase domain-like	8092268	3001528	SCOP2B (2022-06-29)
A	SCOP2 Family	BVU_0362 N-terminal domain-like	8045823	4004709	SCOP2 (2022-06-29)
A	SCOP2 Family	GH5 catalytic domain-like	8048377	4006076	SCOP2 (2022-06-29)
A	SCOP2 Family	BVU_0362 C-terminal domain-like	8092265	4007767	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	E set domains	8092266	3000070	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	(Trans)glycosidases	8092267	3000313	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Glycosyl hydrolase domain-like	8092268	3001528	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	UNK_F_TYPE	e4n0rB1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
B	EUF07808	e4n0rB2	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: EUF07808	ECOD (1.6)
B	DUF4038	e4n0rB3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)
A	UNK_F_TYPE	e4n0rA1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: UNK_F_TYPE	ECOD (1.6)
A	EUF07808	e4n0rA3	A: beta sandwiches	X: Glycosyl hydrolase domain-like	H: Glycosyl hydrolase domain (From Topology)	T: Glycosyl hydrolase domain	F: EUF07808	ECOD (1.6)
A	DUF4038	e4n0rA2	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: DUF4038	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
B	2.60.40.3950	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
A	3.20.20.80	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Glycosidases	CATH (4.3.0)
A	2.60.40.3950	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF18310	Domain of unknown function (DUF5605) (DUF5605)	Domain of unknown function (DUF5605)	This domain is found in the C-terminal region of proteins carrying Pfam:PF16586 and Pfam:PF13204. The C-terminal domain is carried by species such as Bacteroides vulgatus.	Domain
A, B	PF16586	Domain of unknown function (DUF5060) (DUF5060)	Domain of unknown function (DUF5060)	This is the N-terminal domain of a putative glycoside hydrolase, DUF4038. It is found in a number of different bacterial orders.	Domain
A, B	PF13204	Apiosidase-like, catalytic domain (Apiosidase)	Apiosidase-like, catalytic domain	This entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glut ...	This entry represents the catalytic domain of endo-apiosidase (Swiss:Q8A905) and related proteins, some of which form part of the rhamnogalacturonan-II (RG-II) degradome. This domain adopts an (alpha-beta)8-barrel that harbours the aspartate and glutamate residues essential for the catalytic activity.	Domain

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR041239	Domain of unknown function DUF5605	Domain
A, B	IPR032260	Domain of unknown function DUF5060	Domain
A, B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, B	IPR017853	Glycoside hydrolase superfamily	Homologous Superfamily
A, B	IPR025277	Apiosidase-like, catalytic domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.