Crystal structure of PfbA, a surface adhesin of Streptococcus pneumoniae
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | MreC | e4mr0B1 | A: a/b three-layered sandwiches | X: DEATH domain | H: HTH | T: winged helix domain | F: MreC | ECOD (v294.1) |
| A | Acylphosphatase | e4mr0A1 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: Nucleotide-binding domain | F: Acylphosphatase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
| A | 2.160.20.10 | Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Single-stranded right-handed beta-helix, Pectin lyase-like | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF13229 | Right handed beta helix region (Beta_helix) | Right handed beta helix region | - | Repeat | |
| PF12708 | Rhamnogalacturonase A/epimerase, pectate lyase-like (Pect-lyase_RHGA_epim) | Rhamnogalacturonase A/epimerase, pectate lyase-like | - | Repeat |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR006626 | Parallel beta-helix repeat | Repeat | |
| IPR012334 | Pectin lyase fold | Homologous Superfamily | |
| IPR005877 | YSIRK Gram-positive signal peptide | Domain | |
| IPR039448 | Right handed beta helix domain | Domain | |
| IPR024535 | Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain | Domain | |
| IPR051801 | Glycosyl_Hydrolase_28_Enzymes | Family | |
| IPR019931 | LPXTG cell wall anchor motif | Conserved Site | |
| IPR011050 | Pectin lyase fold/virulence factor | Homologous Superfamily |
