4MNH | pdb_00004mnh

Structure of the DP10.7 TCR

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
IMGT Antibody Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	V-set	e4mnhA5	A: a/b three-layered sandwiches	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: V-set	ECOD (v294.1)
C	DUF1968	e4mnhC1	A: a/b three-layered sandwiches	X: dsRBD-like	H: Peptidyl-tRNA hydrolase domain-like	T: Peptidyl-tRNA hydrolase domain-like	F: DUF1968	ECOD (v294.1)
B	DUF1968	e4mnhB1	A: a/b three-layered sandwiches	X: dsRBD-like	H: Peptidyl-tRNA hydrolase domain-like	T: Peptidyl-tRNA hydrolase domain-like	F: DUF1968	ECOD (v294.1)
D	DUF1968	e4mnhD1	A: a/b three-layered sandwiches	X: dsRBD-like	H: Peptidyl-tRNA hydrolase domain-like	T: Peptidyl-tRNA hydrolase domain-like	F: DUF1968	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
C	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
B	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)
D	2.60.40.10	Mainly Beta	Sandwich	Immunoglobulin-like	Immunoglobulins	CATH (4.3.0)

IMGT Antibody Annotation IMGT Database Homepage

Chain	Protein Name	Description	Organism Name	Gene Allele Name(s)	Domain Name(s)	Receptor Type	Receptor Description	Provenance Source
A, C	V-gamma4_V-delta1	V-GAMMA-C-BETA-2	Homo sapiens (human)	TRGV401, TRGV402, TRGJ101, TRGJ201, TRBC201, TRBC202	V-DOMAIN V-GAMMA, C-DOMAIN C-BETA-2	TR	(V-DELTA-C-ALPHA_V-GAMMA-C-BETA-2)	IMGT (202612-0)
B, D	V-gamma4_V-delta1	V-DELTA-C-ALPHA	Homo sapiens (human)	TRDV101, TRDJ101, TRAC*01	V-DOMAIN V-DELTA, C-DOMAIN C-ALPHA	TR	(V-DELTA-C-ALPHA_V-GAMMA-C-BETA-2)	IMGT (202612-0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C	T-cell receptor gamma chain V region PT-gamma-1/2, Human nkt tcr beta chain	cation binding ion binding binding metal ion binding small molecule binding	immune system process	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex T cell receptor complex
B, D	Human nkt tcr alpha chain	-	response to stimulus immune response immune system process adaptive immune response	cell periphery protein-containing complex cellular anatomical structure plasma membrane protein complex membrane plasma membrane plasma membrane signaling receptor complex membrane protein complex signaling receptor complex T cell receptor complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C	IPR003597	Immunoglobulin C1-set	Domain
A, C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
A, C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
A, C	IPR013106	Immunoglobulin V-set domain	Domain
A, C	IPR003599	Immunoglobulin domain subtype	Domain
A, C	IPR007110	Immunoglobulin-like domain	Domain
A, C	IPR050413	T cell receptor beta variable	Family
B, D	IPR003597	Immunoglobulin C1-set	Domain
B, D	IPR051006	T cell receptor variable domain	Family
B, D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B, D	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B, D	IPR013106	Immunoglobulin V-set domain	Domain
B, D	IPR003599	Immunoglobulin domain subtype	Domain
B, D	IPR007110	Immunoglobulin-like domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.