4MN7 | pdb_00004mn7

Structural and biochemical analysis of type II free methionine-R-sulfoxide reductase from Thermoplasma acidophilum

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BGAF_2e4mn7B1 A: a/b three-layered sandwichesX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF: GAF_2ECOD (v294.1)
Ae4mn7A1 A: a/b three-layered sandwichesX: avirulence protein AvrPiz-t homologsH: avirulence protein AvrPiz-t homologsT: avirulence protein AvrPiz-t homologsF:ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.30.450.40 Alpha Beta 2-Layer Sandwich Beta-Lactamase GAF domainCATH (4.3.0)
A3.30.450.40 Alpha Beta 2-Layer Sandwich Beta-Lactamase GAF domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF13185GAF domain (GAF_2)GAF domainThe GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes [1,2]. The structure of a GAF domain shows that the doma ...The GAF domain is named after some of the proteins it is found in, including cGMP-specific phosphodiesterases, adenylyl cyclases and FhlA. It is also found in guanylyl cyclases and phytochromes [1,2]. The structure of a GAF domain shows that the domain shares a similar fold with the PAS domain [3]. This domain can bind O2, CO and NO (Matilla et.al., FEMS Microbiology Reviews, fuab043, 45, 2021, 1. https://doi.org/10.1093/femsre/fuab043).
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR003018GAF domainDomain
A, B
IPR029016GAF-like domain superfamilyHomologous Superfamily