4MJS

crystal structure of a PB1 complex


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad4mjsa1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ad4mjsa2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Cd4mjsc1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Cd4mjsc2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ed4mjse1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ed4mjse2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Gd4mjsg1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Gd4mjsg2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Id4mjsi1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Id4mjsi2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Kd4mjsk1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Kd4mjsk2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Md4mjsm1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Md4mjsm2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Od4mjso1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Od4mjso2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Qd4mjsq1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Qd4mjsq2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Sd4mjss1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Sd4mjss2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ud4mjsu1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Ud4mjsu2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Wd4mjsw1 Alpha and beta proteins (a+b) beta-Grasp (ubiquitin-like) CAD & PB1 domains PB1 domain automated matches brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)
Wd4mjsw2 Artifacts Tags Tags Tags N-terminal Tags brown rat,rat,rats (Rattus norvegicus ) [TaxId: 10116 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyPB1 domain8080984 4003488 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2 (2022-06-29)
CSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
OSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
QSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
SSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
USCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)
WSCOP2B SuperfamilyCAD & PB1 domains8080985 3000318 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF00564e4mjsA1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
CPF00564e4mjsC1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
EPF00564e4mjsE1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
GPF00564e4mjsG1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
IPF00564e4mjsI1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
KPF00564e4mjsK1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
MPF00564e4mjsM1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
OPF00564e4mjsO1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
QPF00564e4mjsQ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
SPF00564e4mjsS1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
UPF00564e4mjsU1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
WPF00564e4mjsW1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
BPF00564e4mjsB1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
DPF00564e4mjsD1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
FPF00564e4mjsF1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
HPF00564e4mjsH1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
JPF00564e4mjsJ1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
LPF00564e4mjsL1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
NPF00564e4mjsN1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
PPF00564e4mjsP1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
RPF00564e4mjsR1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
TPF00564e4mjsT1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
VPF00564e4mjsV1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)
XPF00564e4mjsX1 A: a+b two layersX: beta-GraspH: Ubiquitin-relatedT: Ubiquitin-likeF: PF00564ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
C3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
E3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
G3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
I3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
K3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
M3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
O3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
Q3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
S3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
U3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
W3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
B3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
D3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
F3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
H3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
J3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
L3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
N3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
P3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
R3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
T3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
V3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)
X3.10.20.90 Alpha Beta Roll Ubiquitin-like (UB roll) Phosphatidylinositol 3-kinase Catalytic SubunitCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, C, E, G, I
PF00564PB1 domain (PB1)PB1 domain- Domain
B, D, F, H, J
PF00564PB1 domain (PB1)PB1 domain- Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, C, E, G, I
Protein kinase C zeta type
B, D, F, H, J
Sequestosome-1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, C, E, G, I
IPR012233Protein kinase CFamily
A, C, E, G, I
IPR020454Diacylglycerol/phorbol-ester bindingDomain
A, C, E, G, I
IPR000719Protein kinase domainDomain
A, C, E, G, I
IPR017892Protein kinase, C-terminalDomain
A, C, E, G, I
IPR017441Protein kinase, ATP binding siteBinding Site
A, C, E, G, I
IPR000270PB1 domainDomain
A, C, E, G, I
IPR000961AGC-kinase, C-terminalDomain
A, C, E, G, I
IPR047314Protein kinase C zeta type, conserved region 1Domain
A, C, E, G, I
IPR002219Protein kinase C-like, phorbol ester/diacylglycerol-binding domainDomain
A, C, E, G, I
IPR034877Protein kinase C, PB1 domainDomain
A, C, E, G, I
IPR011009Protein kinase-like domain superfamilyHomologous Superfamily
A, C, E, G, I
IPR046349C1-like domain superfamilyHomologous Superfamily
A, C, E, G, I
IPR008271Serine/threonine-protein kinase, active siteActive Site
B, D, F, H, J
IPR043145Zinc finger, ZZ-type superfamilyHomologous Superfamily
B, D, F, H, J
IPR000433Zinc finger, ZZ-typeDomain
B, D, F, H, J
IPR033741Sequestosome-1, UBA domainDomain
B, D, F, H, J
IPR009060UBA-like superfamilyHomologous Superfamily
B, D, F, H, J
IPR000270PB1 domainDomain
B, D, F, H, J
IPR015940Ubiquitin-associated domainDomain
B, D, F, H, J
IPR034866Sequestosome-1, PB1 domainDomain