4M92 | pdb_00004m92

Crystal structure of hN33/Tusc3-peptide 2

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Thioredoxin-like	8095961	3000031	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDH_C	e4m92A1	A: a/b three-layered sandwiches	X: DEATH domain	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: 6-phosphogluconate dehydrogenase C-terminal domain-like	F: PDH_C	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF04756	OST3 / OST6 family, transporter family (OST3_OST6)	OST3 / OST6 family, transporter family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Tumor suppressor candidate 3	monoatomic cation transmembrane transporter activity magnesium ion transmembrane transporter activity monoatomic ion transmembrane transporter activity transporter activity metal ion transmembrane transporter activity transmembrane transporter activity	carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process localization transport carbohydrate derivative biosynthetic process glycoprotein biosynthetic process carbohydrate derivative metabolic process primary metabolic process glycoprotein metabolic process protein N-linked glycosylation macromolecule biosynthetic process biosynthetic process metabolic process cellular process protein metabolic process macromolecule metabolic process localization transport magnesium ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport monoatomic ion transmembrane transport magnesium ion transmembrane transport monoatomic cation transmembrane transport transmembrane transport multicellular organismal process system process nervous system process cognition	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex organelle subcompartment oligosaccharyltransferase complex membrane membrane protein complex membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex organelle subcompartment oligosaccharyltransferase complex membrane membrane protein complex transferase complex endomembrane system endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum protein-containing complex endoplasmic reticulum membrane cell periphery plasma membrane
B	Interleukin-1 receptor accessory protein-like 1	protein binding binding signaling receptor binding hydrolase activity, acting on glycosyl bonds NAD+ nucleosidase activity, cyclic ADP-ribose generating hydrolase activity hydrolase activity, hydrolyzing N-glycosyl compounds catalytic activity	regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of localization regulation of cellular process transport negative regulation of biological process negative regulation of transport vesicle-mediated transport localization negative regulation of secretion regulation of secretion by cell secretion by cell negative regulation of exocytosis negative regulation of cellular process negative regulation of secretion by cell regulation of biological process regulation of transport secretion biological regulation export from cell regulation of vesicle-mediated transport establishment of localization regulation of secretion exocytosis regulation of exocytosis cellular process positive regulation of nervous system development multicellular organismal process positive regulation of cellular component organization regulation of cellular component organization regulation of developmental process positive regulation of biological process regulation of nervous system development positive regulation of developmental process cellular component organization cellular component biogenesis multicellular organism development cellular component assembly cell junction assembly anatomical structure development regulation of multicellular organismal process regulation of synapse structure or activity synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality positive regulation of cellular process system development developmental process regulation of multicellular organismal development positive regulation of cellular component biogenesis nervous system development regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly regulation of synapse organization cell junction organization positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly membrane organization presynapse organization membrane biogenesis presynaptic membrane assembly membrane assembly presynaptic membrane organization presynapse assembly cell adhesion cell-cell adhesion synaptic membrane adhesion regulation of presynapse assembly regulation of presynapse organization cellular developmental process generation of neurons neurogenesis neuron differentiation cell differentiation trans-synaptic signaling synaptic signaling trans-synaptic signaling by trans-synaptic complex signaling cell-cell signaling cell communication cellular response to stimulus cell surface receptor signaling pathway response to stimulus signal transduction regulation of neuron projection development cell projection organization cell development neuron projection development plasma membrane bounded cell projection organization regulation of cell projection organization neuron development regulation of plasma membrane bounded cell projection organization postsynapse organization regulation of postsynapse organization positive regulation of dendritic spine morphogenesis positive regulation of dendritic spine development regulation of cell differentiation regulation of neurogenesis regulation of cell morphogenesis regulation of cell development cell projection morphogenesis neuron projection morphogenesis regulation of dendrite morphogenesis positive regulation of cell projection organization dendritic spine morphogenesis dendritic spine development dendritic spine organization positive regulation of cell development positive regulation of cell morphogenesis regulation of dendrite development plasma membrane bounded cell projection morphogenesis regulation of dendritic spine development cell morphogenesis dendrite development positive regulation of neuron projection development positive regulation of cell differentiation positive regulation of neurogenesis regulation of anatomical structure morphogenesis dendrite morphogenesis positive regulation of dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of dendritic spine morphogenesis neuron projection organization	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface somatodendritic compartment cell projection dendrite cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm glutamatergic synapse axon

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR021149	MAGT1/OST3/OST6	Family
A	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
B	IPR000157	Toll/interleukin-1 receptor homology (TIR) domain	Domain
B	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
B	IPR003598	Immunoglobulin subtype 2	Domain
B	IPR003599	Immunoglobulin domain subtype	Domain
B	IPR041416	IL-1Ra-like, immunoglobulin domain	Domain
B	IPR013151	Immunoglobulin-like beta-sandwich domain	Domain
B	IPR015621	Interleukin-1 receptor family	Family
B	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
B	IPR035897	Toll/interleukin-1 receptor homology (TIR) domain superfamily	Homologous Superfamily
B	IPR007110	Immunoglobulin-like domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: Q13454	intellectual disability, autosomal recessive 7 intellectual disability Liver Cirrhosis, Experimental subependymal giant cell astrocytoma adenoma breast cancer glioblastoma interstitial cystitis lung carcinoma osteosarcoma Pick disease ulcerative colitis astrocytic tumor congenital disorder of glycosylation malignant glioma intellectual disability, autosomal recessive 7 intellectual disability Liver Cirrhosis, Experimental subependymal giant cell astrocytoma adenoma breast cancer glioblastoma interstitial cystitis lung carcinoma osteosarcoma Pick disease ulcerative colitis astrocytic tumor congenital disorder of glycosylation malignant glioma ovarian cancer psoriasis atypical teratoid rhabdoid tumor Duchenne muscular dystrophy lung cancer oligodendroglioma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
B	Pharos: Q9NZN1	melanoma autism intellectual disability intellectual disability, X-linked 21 MENTAL RETARDATION, X-LINKED 34 (disorder) primitive neuroectodermal tumor vitiligo astrocytic tumor autism, susceptibility to, X-linked 2 glioblastoma large cell medulloblastoma malignant mesothelioma non-syndromic X-linked intellectual disability psoriasis autism spectrum disorder melanoma autism intellectual disability intellectual disability, X-linked 21 MENTAL RETARDATION, X-LINKED 34 (disorder) primitive neuroectodermal tumor vitiligo astrocytic tumor autism, susceptibility to, X-linked 2 glioblastoma large cell medulloblastoma malignant mesothelioma non-syndromic X-linked intellectual disability psoriasis autism spectrum disorder malignant ependymoma medulloblastoma ovarian cancer atypical teratoid rhabdoid tumor cutaneous melanoma malignant glioma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.