4M70 | pdb_00004m70

Crystal structure of potato Rx-CC domain in complex with RanGAP2-WPP domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J [auth R]	WPP	e4m70R1	A: alpha arrays	X: RuvA-C	H: RanGAP2 N-terminal domain (From Topology)	T: RanGAP2 N-terminal domain	F: WPP	ECOD (1.6)
I [auth K]	WPP	e4m70K1	A: alpha arrays	X: RuvA-C	H: RanGAP2 N-terminal domain (From Topology)	T: RanGAP2 N-terminal domain	F: WPP	ECOD (1.6)
F [auth B]	WPP	e4m70B1	A: alpha arrays	X: RuvA-C	H: RanGAP2 N-terminal domain (From Topology)	T: RanGAP2 N-terminal domain	F: WPP	ECOD (1.6)
D [auth J]	WPP	e4m70J1	A: alpha arrays	X: RuvA-C	H: RanGAP2 N-terminal domain (From Topology)	T: RanGAP2 N-terminal domain	F: WPP	ECOD (1.6)
B [auth E]	WPP	e4m70E1	A: alpha arrays	X: RuvA-C	H: RanGAP2 N-terminal domain (From Topology)	T: RanGAP2 N-terminal domain	F: WPP	ECOD (1.6)
H [auth Q]	RX-CC_like_1	e4m70Q1	A: alpha bundles	X: N-cbl like	H: Resistance protein (Rx) N-terminal domain (From Topology)	T: Resistance protein (Rx) N-terminal domain	F: RX-CC_like_1	ECOD (1.6)
G [auth H]	RX-CC_like_1	e4m70H1	A: alpha bundles	X: N-cbl like	H: Resistance protein (Rx) N-terminal domain (From Topology)	T: Resistance protein (Rx) N-terminal domain	F: RX-CC_like_1	ECOD (1.6)
E [auth I]	RX-CC_like_1	e4m70I1	A: alpha bundles	X: N-cbl like	H: Resistance protein (Rx) N-terminal domain (From Topology)	T: Resistance protein (Rx) N-terminal domain	F: RX-CC_like_1	ECOD (1.6)
C [auth L]	RX-CC_like_1	e4m70L1	A: alpha bundles	X: N-cbl like	H: Resistance protein (Rx) N-terminal domain (From Topology)	T: Resistance protein (Rx) N-terminal domain	F: RX-CC_like_1	ECOD (1.6)
A	RX-CC_like_1	e4m70A1	A: alpha bundles	X: N-cbl like	H: Resistance protein (Rx) N-terminal domain (From Topology)	T: Resistance protein (Rx) N-terminal domain	F: RX-CC_like_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F [auth B]	1.10.246.200	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.3.0)
H [auth Q]	1.20.5.4130	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G [auth H]	1.20.5.4130	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E [auth I]	1.20.5.4130	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C [auth L]	1.20.5.4130	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.4130	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
J [auth R]	PF13943	WPP domain (WPP)	WPP domain		Domain
B [auth E], D [auth J], F [auth B], I [auth K]	PF13943	WPP domain (WPP)	WPP domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
J [auth R]	Ran GTPase activating protein 2	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to other organism response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
B [auth E], D [auth J], F [auth B], I [auth K]	Ran GTPase activating protein 2	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to other organism response to stress response to external stimulus response to external biotic stimulus response to biotic stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, C [auth L], E [auth I], G [auth H], H [auth Q]	Rx protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding ADP binding	cellular response to stimulus biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response immune response defense response to symbiont response to external stimulus cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress defense response to other organism response to stress immune system process cellular response to stimulus biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response immune response defense response to symbiont response to external stimulus cell death response to biotic stimulus symbiont-induced defense-related programmed cell death cellular response to stress defense response to other organism response to stress immune system process plant-type hypersensitive response innate immune response cellular process response to external biotic stimulus programmed cell death defense response to virus response to virus	cellular anatomical structure membrane intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
J [auth R]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
J [auth R]	IPR038214	WPP domain superfamily	Homologous Superfamily
J [auth R]	IPR001611	Leucine-rich repeat	Repeat
J [auth R]	IPR025265	WPP domain	Domain
J [auth R]	IPR045203	RAN GTPase-activating protein 1/2	Family
B [auth E], D [auth J], F [auth B], I [auth K]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
B [auth E], D [auth J], F [auth B], I [auth K]	IPR038214	WPP domain superfamily	Homologous Superfamily
B [auth E], D [auth J], F [auth B], I [auth K]	IPR001611	Leucine-rich repeat	Repeat
B [auth E], D [auth J], F [auth B], I [auth K]	IPR025265	WPP domain	Domain
B [auth E], D [auth J], F [auth B], I [auth K]	IPR045203	RAN GTPase-activating protein 1/2	Family
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR042197	Apoptotic protease-activating factors, helical domain	Homologous Superfamily
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR036388	Winged helix-like DNA-binding domain superfamily	Homologous Superfamily
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR038005	Virus X resistance protein-like, coiled-coil domain	Domain
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR055414	Disease resistance R13L4/SHOC-2-like, LRR domain	Domain
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR044974	Disease resistance protein, plants	Family
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR002182	NB-ARC	Domain
A, C [auth L], E [auth I], G [auth H], H [auth Q]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.