4M00 | pdb_00004m00

Crystal structure of the ligand binding region of staphylococcal adhesion SraP


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyMUB repeats-like 8095849 3002709 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ALectin_legB_1e4m00A1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Concanavalin A-like lectins/glucanasesF: Lectin_legB_1ECOD (1.6)
AHe_PIGe4m00A4 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: He_PIGECOD (1.6)
AMucBPe4m00A2 A: beta sandwichesX: Mucin-binding protein domain (From Topology)H: Mucin-binding protein domain (From Topology)T: Mucin-binding protein domainF: MucBPECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.120.200 Mainly Beta Sandwich Jelly Rolls CATH (4.3.0)
A3.10.20.320 Alpha Beta Roll Ubiquitin-like (UB roll) Putative peptidoglycan bound protein (lpxtg motif)CATH (4.3.0)
A2.60.40.10 Mainly Beta Sandwich Immunoglobulin-like ImmunoglobulinsCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF18483Legume lectin beta-barrel domain (Lectin_L-type_dom)Legume lectin beta-barrel domainThis entry represents a domain found in legume-like lectin. Legume-type (L-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. L-type lectins have a do ...This entry represents a domain found in legume-like lectin. Legume-type (L-type) lectins are a highly diverse family of carbohydrate binding proteins that generally display no enzymatic activity toward the sugars they bind. L-type lectins have a dome-shaped beta-barrel carbohydrate recognition domain with a curved seven-stranded beta-sheet referred to as the "front face" and a flat six-stranded beta-sheet referred to as the "back face". This domain homodimerises so that adjacent back sheets form a contiguous 12-stranded sheet and homotetramers occur by a back-to-back association of these homodimers. Though L-type lectins exhibit both sequence and structural similarity to one another, their carbohydrate binding specificities differ widely.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage