4LAF | pdb_00004laf

Crystal structure of PnpB complex with FMN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4lafd_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	(Pseudomonas sp. WBC-3 ) [TaxId: 165468 ],	SCOPe (2.08)
C	d4lafc_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	(Pseudomonas sp. WBC-3 ) [TaxId: 165468 ],	SCOPe (2.08)
B	d4lafb_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	(Pseudomonas sp. WBC-3 ) [TaxId: 165468 ],	SCOPe (2.08)
A	d4lafa_	Alpha and beta proteins (a/b)	Flavodoxin-like	Flavoproteins	automated matches	automated matches	(Pseudomonas sp. WBC-3 ) [TaxId: 165468 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Flavoproteins	8088822	3001217	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Flavoproteins	8088822	3001217	SCOP2B (2022-06-29)
B	SCOP2 Family	WrbA-like	8088821	4003377	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Flavoproteins	8088822	3001217	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Flavoproteins	8088822	3001217	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Terpene_syn_C_2	e4lafD1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (v294.1)
C	Terpene_syn_C_2	e4lafC1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (v294.1)
B	Terpene_syn_C_2	e4lafB1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (v294.1)
A	Terpene_syn_C_2	e4lafA1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: Terpene_syn_C_2	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
C	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
B	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)
A	3.40.50.360	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	Flavodoxin domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	NAD(P)H dehydrogenase (quinone)	FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding purine nucleotide binding adenyl nucleotide binding NADP binding oxidoreductase activity FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding purine nucleotide binding adenyl nucleotide binding NADP binding oxidoreductase activity p-benzoquinone reductase (NADPH) activity oxidoreductase activity, acting on NAD(P)H oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor catalytic activity flavin adenine dinucleotide binding NAD(P)H dehydrogenase (quinone) activity NAD binding	cellular response to stimulus catabolic process response to stimulus cellular response to xenobiotic stimulus 4-nitrophenol catabolic process xenobiotic catabolic process 4-nitrophenol metabolic process xenobiotic metabolic process response to xenobiotic stimulus phenol-containing compound catabolic process cellular response to chemical stimulus response to chemical phenol-containing compound metabolic process metabolic process cellular response to stimulus catabolic process response to stimulus cellular response to xenobiotic stimulus 4-nitrophenol catabolic process xenobiotic catabolic process 4-nitrophenol metabolic process xenobiotic metabolic process response to xenobiotic stimulus phenol-containing compound catabolic process cellular response to chemical stimulus response to chemical phenol-containing compound metabolic process metabolic process cellular process generation of precursor metabolites and energy	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR010089	Flavoprotein WrbA-like	Family
A, B, C, D	IPR005025	NADPH-dependent FMN reductase-like domain	Domain
A, B, C, D	IPR008254	Flavodoxin/nitric oxide synthase	Domain
A, B, C, D	IPR037513	NAD(P)H dehydrogenase (quinone), prokaryotic	Family
A, B, C, D	IPR029039	Flavoprotein-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.