4L8Y
Crystal structure of gamma-glutamyl hydrolase (C108A) from zebrafish
Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | d4l8yb_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | zebra fish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
A [auth C] | d4l8yc_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | zebra fish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
B [auth D] | d4l8yd_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | zebra fish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
C [auth A] | d4l8ya_ | Alpha and beta proteins (a/b) | Flavodoxin-like | Class I glutamine amidotransferase-like | automated matches | automated matches | zebra fish (Danio rerio ) [TaxId: 7955 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
D [auth B] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8088115 | 3001405 | SCOP2B (2022-06-29) |
A [auth C] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8088115 | 3001405 | SCOP2B (2022-06-29) |
B [auth D] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8088115 | 3001405 | SCOP2B (2022-06-29) |
C [auth A] | SCOP2B Superfamily | Class I glutamine amidotransferase-like | 8088115 | 3001405 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
D [auth B] | GATase | e4l8yB1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
A [auth C] | GATase | e4l8yC1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
B [auth D] | GATase | e4l8yD1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
C [auth A] | GATase | e4l8yA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: Class I glutamine amidotransferase-like | F: GATase | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
D [auth B] | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
A [auth C] | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
B [auth D] | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
C [auth A] | 3.40.50.880 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Class I glutamine amidotransferase (GATase) domain | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth C], B [auth D], C [auth A], D [auth B] | PF00117 | Glutamine amidotransferase class-I (GATase) | Glutamine amidotransferase class-I | - | Domain |
A [auth C], B [auth D], C [auth A], D [auth B] | PF07722 | Peptidase C26 (Peptidase_C26) | Peptidase C26 | These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to Pfam:PF00117, but contain extensions in four loops and at the C ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth C], B [auth D], C [auth A], D [auth B] | IPR029062 | Class I glutamine amidotransferase-like | Homologous Superfamily |
A [auth C], B [auth D], C [auth A], D [auth B] | IPR015527 | Peptidase C26, gamma-glutamyl hydrolase | Family |
A [auth C], B [auth D], C [auth A], D [auth B] | IPR011697 | Peptidase C26 | Family |