4L82 | pdb_00004l82

Structure of a putative oxidoreductase from Rickettsia felis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4l82d_	All beta proteins	Split barrel-like	FMN-binding split barrel	automated matches	automated matches	(Rickettsia felis URRWXCal2 ) [TaxId: 315456 ],	SCOPe (2.08)
C	d4l82c_	All beta proteins	Split barrel-like	FMN-binding split barrel	automated matches	automated matches	(Rickettsia felis URRWXCal2 ) [TaxId: 315456 ],	SCOPe (2.08)
B	d4l82b1	All beta proteins	Split barrel-like	FMN-binding split barrel	automated matches	automated matches	(Rickettsia felis URRWXCal2 ) [TaxId: 315456 ],	SCOPe (2.08)
B	d4l82b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Rickettsia felis URRWXCal2 ) [TaxId: 315456 ],	SCOPe (2.08)
A	d4l82a_	All beta proteins	Split barrel-like	FMN-binding split barrel	automated matches	automated matches	(Rickettsia felis URRWXCal2 ) [TaxId: 315456 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	FMN-binding split barrel	8063932	3000856	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	FMN-binding split barrel	8063932	3000856	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	FMN-binding split barrel	8063932	3000856	SCOP2B (2022-06-29)
A	SCOP2 Family	NADH:FMN oxidoreductase-like	8063931	4002136	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	FMN-binding split barrel	8063932	3000856	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Flavin_Reduct	e4l82D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Flavin_Reduct	ECOD (1.6)
C	Flavin_Reduct	e4l82C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Flavin_Reduct	ECOD (1.6)
B	Flavin_Reduct	e4l82B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Flavin_Reduct	ECOD (1.6)
A	Flavin_Reduct	e4l82A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: FMN-binding split barrel	F: Flavin_Reduct	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.30.110.10	Mainly Beta	Roll	Pnp Oxidase	Chain A	CATH (4.3.0)
C	2.30.110.10	Mainly Beta	Roll	Pnp Oxidase	Chain A	CATH (4.3.0)
B	2.30.110.10	Mainly Beta	Roll	Pnp Oxidase	Chain A	CATH (4.3.0)
A	2.30.110.10	Mainly Beta	Roll	Pnp Oxidase	Chain A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	RifeA.00250.a	FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding riboflavin reductase (NADPH) activity riboflavin reductase [NAD(P)H] activity oxidoreductase activity oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor FMN binding binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding riboflavin reductase (NADPH) activity riboflavin reductase [NAD(P)H] activity oxidoreductase activity oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor oxidoreductase activity, acting on the CH-NH group of donors catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012349	FMN-binding split barrel	Homologous Superfamily
A, B, C, D	IPR002563	Flavin reductase like domain	Domain
A, B, C, D	IPR050268	NADH-dependent flavin reductase	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.