4KYI
Crystal structure of the phospholipase VipD from Legionella pneumophila in complex with the human GTPase Rab5
External Resource: Annotation
- Domain Annotation: SCOP/SCOPe Classification
- Domain Annotation: SCOP2 Classification
- Domain Annotation: ECOD Classification
- Domain Annotation: CATH
- Protein Family Annotation
- Gene Ontology: Gene Product Annotation
- InterPro: Protein Family Classification
- Pharos: Disease Associations
- Membrane Protein Annotation: OPM
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8098730 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8098730 | 3002022 | SCOP2B (2022-06-29) |
F | SCOP2 Family | Ras-like monodomain GTPases | 8098729 | 4004043 | SCOP2 (2022-06-29) |
F | SCOP2 Superfamily | Ras-like P-loop GTPases | 8098730 | 3002022 | SCOP2 (2022-06-29) |
H | SCOP2B Superfamily | Ras-like P-loop GTPases | 8098730 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22140 | e4kyiA2 | A: alpha bundles | X: ExoU toxin middle helical domain (From Topology) | H: ExoU toxin middle helical domain (From Topology) | T: ExoU toxin middle helical domain | F: PF22140 | ECOD (1.6) |
A | PF01734 | e4kyiA1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF01734 | ECOD (1.6) |
C | PF22140 | e4kyiC2 | A: alpha bundles | X: ExoU toxin middle helical domain (From Topology) | H: ExoU toxin middle helical domain (From Topology) | T: ExoU toxin middle helical domain | F: PF22140 | ECOD (1.6) |
C | PF01734 | e4kyiC3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF01734 | ECOD (1.6) |
E | PF22140 | e4kyiE2 | A: alpha bundles | X: ExoU toxin middle helical domain (From Topology) | H: ExoU toxin middle helical domain (From Topology) | T: ExoU toxin middle helical domain | F: PF22140 | ECOD (1.6) |
E | PF01734 | e4kyiE3 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF01734 | ECOD (1.6) |
G | PF22140 | e4kyiG2 | A: alpha bundles | X: ExoU toxin middle helical domain (From Topology) | H: ExoU toxin middle helical domain (From Topology) | T: ExoU toxin middle helical domain | F: PF22140 | ECOD (1.6) |
G | PF01734 | e4kyiG1 | A: a/b three-layered sandwiches | X: Flavodoxin-like | H: Class I glutamine amidotransferase-like | T: FabD/lysophospholipase-like | F: PF01734 | ECOD (1.6) |
B | PF00071 | e4kyiB1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
D | PF00071 | e4kyiD1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
F | PF00071 | e4kyiF1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
H | PF00071 | e4kyiH1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00071 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01734 | Patatin-like phospholipase (Patatin) | Patatin-like phospholipase | - | Family | |
PF00071 | Ras family (Ras) | Ras family | Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See Pfam:PF00009 Pfam:PF00025, Pfam:PF00063. As regards Rab GTPases, these are important regulators of vesicle formation, motil ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016035 | Acyl transferase/acyl hydrolase/lysophospholipase | Homologous Superfamily | |
IPR002641 | Patatin-like phospholipase domain | Domain | |
IPR001806 | Small GTPase | Family | |
IPR005225 | Small GTP-binding protein domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |
Pharos: Disease Associations Pharos Homepage Annotation
Chains | Drug Target   | Associated Disease |
---|---|---|
P51148 | : 
Membrane Protein Annotation: OPM OPM Database Homepage
Chains | External Link | Type | Class | Superfamily | Family |
---|---|---|---|---|---|
OPM | Monotopic/peripheral | Alpha/Beta monotopic/peripheral | P-loop containing nucleoside triphosphate hydrolases | Ras family |