4KVL

Crystal structure of Oryza sativa fatty acid alpha-dioxygenase Y379F with palmitic acid

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	An_peroxidase	e4kvlA1	A: alpha complex topology	X: Heme-dependent peroxidases (From Topology)	H: Heme-dependent peroxidases (From Topology)	T: Heme-dependent peroxidases	F: An_peroxidase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.640.10	Mainly Alpha	Orthogonal Bundle	Myeloperoxidase, subunit C	Haem peroxidase domain superfamily, animal type	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF03098	Animal haem peroxidase (An_peroxidase)	Animal haem peroxidase	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Fatty acid alpha-oxidase	peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity binding organic cyclic compound binding tetrapyrrole binding heme binding oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity, acting on single donors with incorporation of molecular oxygen dioxygenase activity cation binding ion binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity binding organic cyclic compound binding tetrapyrrole binding heme binding oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen oxidoreductase activity, acting on single donors with incorporation of molecular oxygen dioxygenase activity cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to salicylic acid stimulus response to organic substance response to stimulus cellular response to organic cyclic compound response to oxygen-containing compound cellular response to oxygen-containing compound response to salicylic acid cellular response to chemical stimulus response to chemical cellular process cellular response to organic substance response to organic cyclic compound cellular response to oxidative stress cellular response to stimulus cellular response to salicylic acid stimulus response to organic substance response to stimulus cellular response to organic cyclic compound response to oxygen-containing compound cellular response to oxygen-containing compound response to salicylic acid cellular response to chemical stimulus response to chemical cellular process cellular response to organic substance response to organic cyclic compound cellular response to oxidative stress cellular response to chemical stress response to reactive oxygen species cellular response to reactive oxygen species response to oxidative stress cellular response to stress response to stress biological process involved in interspecies interaction between organisms response to other organism defense response response to external stimulus response to biotic stimulus defense response to fungus defense response to other organism response to external biotic stimulus response to fungus response to abscisic acid response to lipid response to hormone response to alcohol response to endogenous stimulus catabolic process oxoacid metabolic process organic acid catabolic process organic acid metabolic process cellular lipid catabolic process cellular catabolic process organic substance metabolic process monocarboxylic acid catabolic process fatty acid oxidation carboxylic acid catabolic process small molecule metabolic process lipid oxidation fatty acid metabolic process lipid catabolic process cellular metabolic process carboxylic acid metabolic process primary metabolic process lipid modification fatty acid catabolic process fatty acid alpha-oxidation cellular lipid metabolic process metabolic process monocarboxylic acid metabolic process small molecule catabolic process organic substance catabolic process lipid metabolic process defense response to bacterium response to bacterium systemic acquired resistance defense response to symbiont cellular response to nitrogen compound cellular response to inorganic substance response to nitrogen compound response to inorganic substance cellular response to nitric oxide response to nitric oxide cellular response to reactive nitrogen species small molecule biosynthetic process oxylipin metabolic process cellular biosynthetic process organic acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process oxylipin biosynthetic process organic substance biosynthetic process unsaturated fatty acid metabolic process organic hydroxy compound metabolic process long-chain fatty acid biosynthetic process lipid biosynthetic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process fatty acid biosynthetic process unsaturated fatty acid biosynthetic process organic hydroxy compound biosynthetic process (R)-2-hydroxy-alpha-linolenic acid biosynthetic process	lipid droplet intracellular organelle intracellular anatomical structure organelle intracellular non-membrane-bounded organelle monolayer-surrounded lipid storage body cellular anatomical entity non-membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR019791	Haem peroxidase, animal-type	Family
A	IPR034815	Alpha-dioxygenase	Family
A	IPR037120	Haem peroxidase domain superfamily, animal type	Homologous Superfamily
A	IPR010255	Haem peroxidase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.