Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyHlyD-like secretion proteins 8048900 4003003 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySingle hybrid motif 8092217 3001880 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHlyD C-terminal domain-like 8092218 3002572 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyHlyD C-terminal domain-like 8092218 3002572 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8092217 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyHlyD C-terminal domain-like 8092218 3002572 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif 8092217 3001880 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyHlyD beta-barrel domain-like 8092216 3002000 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyHlyD C-terminal domain-like 8092218 3002572 SCOP2B (2022-06-29)
DSCOP2B SuperfamilySingle hybrid motif 8092217 3001880 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AHlyD_D23_Ce4kkuA2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
A8a0102e4kkuA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: 8a0102ECOD (1.6)
ABiotin_lipoyl_1e4kkuA3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)
BHlyD_D23_Ce4kkuB2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
B8a0102e4kkuB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: 8a0102ECOD (1.6)
BBiotin_lipoyl_1e4kkuB3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)
CHlyD_D23_Ce4kkuC4 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
C8a0102e4kkuC3 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: 8a0102ECOD (1.6)
CBiotin_lipoyl_1e4kkuC5 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)
DHlyD_D23_Ce4kkuD2 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: HlyD_D23_CECOD (1.6)
D8a0102e4kkuD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: 8a0102ECOD (1.6)
DBiotin_lipoyl_1e4kkuD3 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Single hybrid motifF: Biotin_lipoyl_1ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.40.420.20 Mainly Beta Beta Barrel conserved putative lor/sdh protein from methanococcus maripaludis s2 fold CATH (4.3.0)
A2.40.30.170 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
A2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
B2.40.420.20 Mainly Beta Beta Barrel conserved putative lor/sdh protein from methanococcus maripaludis s2 fold CATH (4.3.0)
B2.40.30.170 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
B2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
C2.40.420.20 Mainly Beta Beta Barrel conserved putative lor/sdh protein from methanococcus maripaludis s2 fold CATH (4.3.0)
C2.40.30.170 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
C2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
D2.40.420.20 Mainly Beta Beta Barrel conserved putative lor/sdh protein from methanococcus maripaludis s2 fold CATH (4.3.0)
D2.40.30.170 Mainly Beta Beta Barrel Elongation Factor Tu (Ef-tu) domain 3CATH (4.3.0)
D2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF25954CusB-like, beta-barrel domain (Beta-barrel_RND_2)CusB-like, beta-barrel domainThis domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. One characterized member is the Cation efflu ...This domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. One characterized member is the Cation efflux system protein CusB which is an essential component of the CusCBA tripartite efflux system from Escherichia coli. This protein plays an essential role in bridging the inner membrane efflux pump CusA and the outer membrane channel CusC to mediate resistance to Cu+ and Ag+ ions. CusB is a multidomain protein and assembles into homohexamer that forms a narrow channel defined by an alpha-helical domain and a barrel-sandwich hybrid domain in which it is inserted [1,2]. The remaining two domains, one of which is represented by this entry, form a cap-like structure that engages in interactions with the CusA trimer. The domain represented in this entry folds into a six-stranded closed beta-barrel with a greek-key topology which has a structural similarity to the C-terminal domain of alanine racemase. This domain is interrupted by the barrel-sandwich hybrid domain which is inserted after the first beta-strand of the barrel. This model does not include the N-terminal strand.
Domain
A, B, C, D
PF25917RND MFP, barrel-sandwich hybrid domain (BSH_RND)RND MFP, barrel-sandwich hybrid domainThis domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the ...This domain is found in the periplasmic membrane fusion proteins (MFPs) that are components of the RND tripartite drug efflux pumps. MFPs bridge the outer membrane factor and an inner membrane transporter. The most characterized MFP AcrA connects the outer membrane factor TolC and the resistance-nodulation-division-type efflux transporter AcrB, which is a major multidrug efflux pump in Escherichia coli [1]. The barrel-sandwich hybrid domain is an important structural feature found in membrane fusion proteins. This domain plays a crucial role in the assembly and function of tripartite drug efflux systems [2]. It is involved in interactions with the other components of the RND pumps.
Domain