4KK0 | pdb_00004kk0

Crystal Structure of TSC1 core domain from S. pombe

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
E	SCOP2 Family	TSC1 core domain-like	8045849	4004724	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	ARM repeat-like	8091412	3000116	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ARM repeat-like	8091412	3000116	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	MAP65_ASE1	e4kk0J1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
I	MAP65_ASE1	e4kk0I1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
H	MAP65_ASE1	e4kk0H1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
G	MAP65_ASE1	e4kk0G1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
F	MAP65_ASE1	e4kk0F1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
E	MAP65_ASE1	e4kk0E1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
D	MAP65_ASE1	e4kk0D1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
C	MAP65_ASE1	e4kk0C1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
B	MAP65_ASE1	e4kk0B1	A: a/b three-layered sandwiches	X: C-terminal domain in some PLP-dependent transferases	H: C-terminal domain in some PLP-dependent transferases	T: C-terminal domain in some PLP-dependent transferases	F: MAP65_ASE1	ECOD (v294.1)
A	zf-C3HC4	e4kk0A1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: ClpP/crotonase	T: ClpP/crotonase	F: zf-C3HC4	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	PF04388	Hamartin protein (Hamartin)	Hamartin protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	Tuberous sclerosis 1 protein homolog	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity	regulation of localization import into cell regulation of cellular process nitrogen compound transport carboxylic acid transmembrane transport transport positive regulation of biological process amino acid transmembrane transport L-amino acid transport L-leucine transport positive regulation of amine transport localization branched-chain amino acid transport positive regulation of transmembrane transport regulation of localization import into cell regulation of cellular process nitrogen compound transport carboxylic acid transmembrane transport transport positive regulation of biological process amino acid transmembrane transport L-amino acid transport L-leucine transport positive regulation of amine transport localization branched-chain amino acid transport positive regulation of transmembrane transport regulation of amino acid transport regulation of amino acid transmembrane transport positive regulation of cellular process regulation of L-leucine import across plasma membrane regulation of biological process organic anion transport carboxylic acid transport regulation of transport import across plasma membrane biological regulation neutral amino acid transport establishment of localization organic cation transport positive regulation of organic acid transport organic acid transport transmembrane transport amino acid transport amine transport regulation of amino acid import across plasma membrane regulation of transmembrane transport positive regulation of transport positive regulation of amino acid transport regulation of organic acid transport L-leucine import across plasma membrane L-alpha-amino acid transmembrane transport cellular process regulation of amine transport amino acid import across plasma membrane positive regulation of L-leucine import across plasma membrane cell cycle regulation of cell cycle cellular response to stimulus response to stimulus negative regulation of signaling signaling negative regulation of intracellular signal transduction negative regulation of biological process regulation of signal transduction negative regulation of cell communication intracellular signal transduction cell communication negative regulation of TOR signaling regulation of intracellular signal transduction negative regulation of cellular process signal transduction TOR signaling regulation of signaling regulation of TOR signaling negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of cell cycle phase transition negative regulation of cell cycle cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition mitotic cell cycle negative regulation of mitotic cell cycle regulation of mitotic cell cycle negative regulation of cell cycle phase transition cell cycle process negative regulation of G1/S transition of mitotic cell cycle negative regulation of mitotic cell cycle phase transition regulation of cell cycle process negative regulation of cell cycle G1/S phase transition negative regulation of cell cycle process regulation of mitotic cell cycle phase transition mitotic cell cycle process regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle mitotic cell cycle phase transition negative regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling L-arginine import across plasma membrane regulation of L-arginine import across plasma membrane positive regulation of L-arginine import across plasma membrane sulfur amino acid transport sulfur compound transport methionine transport methionine import across plasma membrane positive regulation of L-methionine import across plasma membrane regulation of L-methionine import across plasma membrane L-methionine import across plasma membrane	protein-containing complex cellular anatomical structure intracellular anatomical structure TSC1-TSC2 complex cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR007483	Hamartin	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR016024	Armadillo-type fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.